Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	275509	280915	5407	30 [1]	[2] 4	[mmuP]–[yagA]	[mmuP],mmuM,afuC,insB2,insA2,yagB,[yagA]

TAACAAACCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGTTATGCAGTGTCTGGGCGAGCTGTCGGTCGCGATGCCGGAGACCGGAGCGTTTCACGTTTATGCCGCGCGCTATCTTGGTCCGGCTACCGGGTATACCGTGGCCTGGCTTTACTGGCTGACCTGGACCGTGGCGCTGGGTTCGAGCTTTACCGCCGCTGGATTCTGTATGCAGTACTGGTTTCCACAGGTGCCGGTATGGGTCTGGTGCGTGGTGTTCTGCGCGATTATTTTTGGTC  >  NC_000913/275276‑275745                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                              taACAAACCTTCTGTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaat                                                                                                                                                                                                                                     <  1:546829‑M1/243‑11 (MQ=255)       aCCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCCATCTGTTTGGTGCGCTGGGGGTCTGGCTGGcacggcaaaaggccaggcgtgggg                                                                                                                                                                                                                       >  1:257148‑M1/1‑227 (MQ=255)       aCCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACCCTGCTGGCCTCTCTTATTGGGGCGCTGGGGGGCTGGCTGGcacgcaaaattgtcaggctggggg                                                                                                                                                                                                                       >  1:352470‑M1/1‑227 (MQ=255)         cttcttTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGGCTGGCTGGctcgcaaaatggcccgtctgtgtgc                                                                                                                                                                                                                      >  1:3292‑M1/1‑225 (MQ=255)              ttGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCTACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccg                                                                                                                                                                                                                  <  1:208735‑M1/249‑30 (MQ=255)                ggATGTTTAGATGTCCATCCGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGAGTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGTTGCGCTGGTGTTCTGGCTGGcacgcaaaatggccagtctggttgaaccgctgc                                                                                                                                                                                                              <  2:527274‑M1/251‑34 (MQ=255)                    gTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcac                                                                                                                                                                                                          <  1:171564‑M1/251‑38 (MQ=255)                            gTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagata                                                                                                                                                                                                  <  1:181281‑M1/251‑46 (MQ=255)                                          aagattaaatgcaaacaaAACAACAAAATGCTCCATTGAAGCGCAAAATGAAAACGCGTCTCCGGATGATGCTTTCCTTGGTCGGCGTGATTGGCACAGGATCATTCTTCAAGTCCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGTCCTATCTGATTGTTGCTCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattctttccggg                                                                                                                                                                                    <  2:34748‑M1/243‑60 (MQ=255)                                                         caacacaacaAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatg                                                                                                                                                                     <  1:109596‑M1/251‑75 (MQ=255)                                                            cacaacaAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtg                                                                                                                                                                  <  1:325569‑M1/251‑78 (MQ=255)                                                                acaaAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcagtcttaccggggcattaggtccgatggtggcgg                                                                                                                                                              <  2:262553‑M1/251‑82 (MQ=255)                                                                   aaagtcgccactgAAACGAACAATGAAAACGCGTCACCTGATTATGCTTTCCTAGGGCGGCGTGATTGACACAGTATTATTCTTCAATACCGGGTACATCATTTCCACCACTTGAGCGGCGTGAACGCTGCTGGCCTATCTTATTCGTGCGCTGGTGGTCTGGCTAGcacgcaaaattgccagtctgggtgaaccgctgctcaccggagatatcgttcttaccggggcattaggtccgatggtggcggtta                                                                                                                                                           <  2:321676‑M1/246‑85 (MQ=255)                                                                          ccACTGAAGCGCACAATGAAAACGCGGCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcggg                                                                                                                                                    <  2:59875‑M1/251‑92 (MQ=255)                                                                               gAAGCACACAATGAAACCCCTTCCCCGGATTATGCTGTCCTTGGGCGGGGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatc                                                                                                                                               <  2:98445‑M1/251‑97 (MQ=255)                                                                                   cgcACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttt                                                                                                                                           <  1:115881‑M1/251‑101 (MQ=255)                                                                                             aaaCGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccat                                                                                                                                 <  1:320429‑M1/251‑111 (MQ=255)                                                                                                          gATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcatag                                                                                                                    <  1:402614‑M1/251‑124 (MQ=255)                                                                                                                                gTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttc                                                                                              <  1:470165‑M1/251‑146 (MQ=255)                                                                                                                                            ggagtattagttaataccgggtactcCATTTCCCCCCCTGGAGCGGCGGGAACGCTGTTGGCTTATATGATGGGTGCGTTGGTGGTCTGGTTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattagttccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgggacattttcaagcgcagctcc                                                                                  <  2:311616‑M1/239‑158 (MQ=255)                                                                                                                                                             cGGGTACATCATTGCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcat                                                                 <  1:428041‑M1/251‑175 (MQ=255)                                                                                                                                                                gTACATTATTTCCACCACTGGGGCGGGGGGAACGCGGCGGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCGGGTTATGCAGTGTCTGGGGGAGCTGTCGGGCGCGATGCGGGAGGCCGGAGCGTTTCACGTTTATGCCGCGCGCTATCTTGGTCCGGCTACCGGTTATACCGGGGCTTGGCTTTACTGGCTGACCTGGCCCGGGGCGGTGGGTTCGAGCTTTACCGCCGCTGGATTCTGTATGCAGCACt                                                              <  1:285840/251‑1 (MQ=255)                                                                                                                                                                         ttCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagccca                                                                                                                                  <  1:296720‑M1/174‑110 (MQ=255)                                                                                                                                                                                     aGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattat                                         <  1:189083‑M1/251‑199 (MQ=255)                                                                                                                                                                                        ggcggGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcgg                                      <  1:491122‑M1/251‑202 (MQ=255)                                                                                                                                                                                           gggAACGCTGCTGGCCTATCTGATTTGAGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgacccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggggaatgcgggcgctcggtttgaagcccatattgaaggcataggttcagttgctgcgacattttcacgcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggatc                                   >  1:210523‑M1/1‑47 (MQ=255)                                                                                                                                                                                                  ctgctgGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggttctggcaac                            >  1:470490‑M1/1‑40 (MQ=255)                                                                                                                                                                                                              cTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgccccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcaaccccaaaaggaagactgtaatgcgtaagcgtaaagtagccattaacggaaatcggaagagaggcgtgt                  >  2:415730‑M1/1‑28 (MQ=255)                                                                                                                                                                                                              cTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattagggccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattgtcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcgg                                      <  1:415730‑M1/229‑202 (MQ=255)                                                                                                                                                                                                                            ggtggtCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattcggtccgatggtggcggtgaatgcgggcgatcgttttgacgcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggttctggcaacattggtaccgatctgatgattaaaat  >  1:518953‑M1/1‑14 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                              TAACAAACCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCTGGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGTTATGCAGTGTCTGGGCGAGCTGTCGGTCGCGATGCCGGAGACCGGAGCGTTTCACGTTTATGCCGCGCGCTATCTTGGTCCGGCTACCGGGTATACCGTGGCCTGGCTTTACTGGCTGACCTGGACCGTGGCGCTGGGTTCGAGCTTTACCGCCGCTGGATTCTGTATGCAGTACTGGTTTCCACAGGTGCCGGTATGGGTCTGGTGCGTGGTGTTCTGCGCGATTATTTTTGGTC  >  NC_000913/275276‑275745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑