| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 275508 | 1 (0.020) | 29 (0.600) | 24/464 | 0.7 | 93.6% | coding (184/1404 nt) | mmuP | S‑methyl‑L‑methionine transporter |
| ? | NC_000913 | 372749 = | 3 (0.060) | coding (635/810 nt) | mhpD | 2‑hydroxypentadienoate hydratase | |||||
TCCGGCGCTGGAAGTGGTGGGGAGCCGCATTCGCGACTGGTCGATTCAGTTTGTCGATACCGTGGCAGATAACGCCTCCTGTGGGGTGTATGTCATCGGCGGTCCGGCGCAACGTCCGGCGGGGTTAGACCTGAAAAACTGCGCCATGAAGATGACGCGTAATAACGAAGAGGTTTCTAGCGGGCGCGGCAGCGAATGCCTGGGACATCCGCTTAATGCGGCCGTCTGGCTGGCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCGATCTGATGATTAAAAT > NC_000913/372516‑372985 | taacaaaccttctgtggatgtttagatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAAt < 1:546829‑M2/10‑1 (MQ=255) accttctttggatgtttagatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcccatctgtttggtgcgctgggggtctggctggCACGGCAaaa‑ggccaggcgtgggg > 1:257148‑M2/228‑243 (MQ=255) accttctttggatgtttagatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaaccctgctggcctctcttattggggcgctggggggctggctggCAC‑GCAAAATTGTCAGGctggggg > 1:352470‑M2/228‑249 (MQ=255) cttctttggatgtttagatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtgggctggctggCTC‑GCAAAATGGCCCGTctgtgtgc > 1:3292‑M2/226‑249 (MQ=255) ttggatgtttagatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgctactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCg < 1:208735‑M2/29‑1 (MQ=255) ggatgtttagatgtccatccgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgagtggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattgttgcgctggtgttctggctggCAC‑GCAAAATGGCCAGTCTGGTTGAACCGCTgc < 2:527274‑M2/33‑1 (MQ=255) gtttagatgtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCAc < 1:171564‑M2/37‑1 (MQ=255) gtccatacgtttagaaggttatatgcaaacaacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGata < 1:181281‑M2/45‑1 (MQ=255) aagattaaatgcaaacaaaacaacaaaatgctccattgaagcgcaaaatgaaaacgcgtctccggatgatgctttccttggtcggcgtgattggcacaggatcattcttcaagtccgggtacatcatttccaccactggagcggcgggaacgctgctgtcctatctgattgttgctctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTTCCggg < 2:34748‑M2/59‑1 (MQ=255) caacacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGAtg < 1:109596‑M2/74‑1 (MQ=255) cacaacaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGAtggtg < 1:325569‑M2/77‑1 (MQ=255) acaaaatgcgccactgaagcgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCAGTCTTACCGGGGCATTAGGTCCGATGGTGGCgg < 2:262553‑M2/81‑1 (MQ=255) aaagtcgccactgaaacgaacaatgaaaacgcgtcacctgattatgctttcctagggcggcgtgattgacacagtattattcttcaataccgggtacatcatttccaccacttgagcggcgtgaacgctgctggcctatcttattcgtgcgctggtggtctggctagCAC‑GCAAAATTGCCAGTCTGGGTGAACCGCTGCTCACCGGAGATATCGTTCTTACCGGGGCATTAGGTCCGATGGTGGCggtta < 2:321676‑M2/84‑3 (MQ=255) ccactgaagcgcacaatgaaaacgcggcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCggg < 2:59875‑M2/91‑1 (MQ=255) gaagcacacaatgaaaccccttccccggattatgctgtccttgggcggggtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATc < 2:98445‑M2/96‑1 (MQ=255) cgcacaatgaaaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGttt < 1:115881‑M2/100‑1 (MQ=255) aaacgcgtcacctgattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCat < 1:320429‑M2/110‑1 (MQ=255) gattatgctttccttgggcggcgtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAg < 1:402614‑M2/123‑1 (MQ=255) gtgattggcacaggattattcttcaataccgggtacatcatttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTc < 1:470165‑M2/145‑1 (MQ=255) ggagtattagttaataccgggtactccatttccccccctggagcggcgggaacgctgttggcttatatgatgggtgcgttggtggtctggttggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGTTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGGGACATTTTCAAGCGcagctcc < 2:311616‑M2/157‑4 (MQ=255) aGATTACGCGTAATAACGAAGAGGTTCCTAGCGGGCGCGGCAGCGAATGCCTGGGACATCCGCTTAATGCGGCCGTCTGGCTGGCAC‑GCAAAATTGCCCGTCTGGGTGAACCGCAGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGGCCGATGGTGGCGGTGAATTCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGAGACATTTTCAAGCGCAGCCCCCAAAGGAAGt < 2:560768/251‑1 (MQ=255) cgggtacatcattgccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCAt < 1:428041‑M2/174‑1 (MQ=255) ttccaccactggagcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCa < 1:296720‑M2/109‑1 (MQ=255) agcggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTAt < 1:189083‑M2/198‑1 (MQ=255) ggcgggaacgctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCgg < 1:491122‑M2/201‑1 (MQ=255) gggaacgctgctggcctatctgatttgagcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGACCCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGGGAATGCGGGCGCTCGGTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCACGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTatcggatc > 1:210523‑M2/48‑248 (MQ=255) ctgctggcctatctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAAc > 1:470490‑M2/41‑251 (MQ=255) cTGGGACATCCGCTTAATGCGGCCGTCTGGCTGGCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAg < 2:132191/211‑1 (MQ=255) cTGGGACATCCGCTTAATGCGGCCGTCTGGCTGGCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAg > 1:132191/1‑211 (MQ=255) ctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCCCCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAACCCCAAAAGGAAGACTGTAATGCGTAagcgtaaagtagccattaacggaaatcggaagagaggcgtgt > 2:415730‑M2/29‑229 (MQ=255) ctgattggtgcgctggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGGCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTGTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCgg < 1:415730‑M2/201‑1 (MQ=255) ggtggtctggctggCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTCGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGACGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCGATCTGATGATTAAAAt > 1:518953‑M2/15‑251 (MQ=255) | TCCGGCGCTGGAAGTGGTGGGGAGCCGCATTCGCGACTGGTCGATTCAGTTTGTCGATACCGTGGCAGATAACGCCTCCTGTGGGGTGTATGTCATCGGCGGTCCGGCGCAACGTCCGGCGGGGTTAGACCTGAAAAACTGCGCCATGAAGATGACGCGTAATAACGAAGAGGTTTCTAGCGGGCGCGGCAGCGAATGCCTGGGACATCCGCTTAATGCGGCCGTCTGGCTGGCAC‑GCAAAATGGCCAGTCTGGGTGAACCGCTGCGCACCGGAGATATCATTCTTACCGGGGCATTAGGTCCGATGGTGGCGGTGAATGCGGGCGATCGTTTTGAAGCCCATATTGAAGGCATAGGTTCAGTTGCTGCGACATTTTCAAGCGCAGCCCCAAAAGGAAGTCTGTCATGAGTAAGCGTAAAGTCGCCATTATCGGTTCTGGCAACATTGGTACCGATCTGATGATTAAAAT > NC_000913/372516‑372985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |