Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	4,542,042	IS1 (+) +8 bp	coding (6‑13/597 nt)	fimE →	regulator for fimA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3583428 =	NA (NA)	41 (0.810)	37/482	0.3	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 4542049	0 (0.000)					coding (13/597 nt)	fimE	regulator for fimA
*	?	NC_000913	= 3584195	NA (NA)	58 (1.150)	53/484	0.1	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	4542042 =	0 (0.000)					coding (6/597 nt)	fimE	regulator for fimA

GTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG  >  NC_000913/3583186‑3583675                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                           gTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGAtgct                                                                                                                                                                                                                                                    >  1:283024/1‑251 (MQ=255) gTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCGTTCTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGAGTACGATTATGTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTGCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGAtgct                                                                                                                                                                                                                                                    <  1:346446/251‑1 (MQ=255)            aGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGTTTATAGCATTTCAATATT‑TACTAATGACATTAAAGGTGATGCTG‑CCAACTTACt                                                                                                                                                                                                                                        >  2:298629/1‑251 (MQ=255)            aGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACt                                                                                                                                                                                                                                        >  1:192923/1‑251 (MQ=255)                                                tttttAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTcc                                                                                                                                                                                                     >  1:373020/1‑249 (MQ=255)                                                                      tCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTg                                                                                                                                                                             >  1:541700/1‑251 (MQ=255)                                                                                        gATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAc                                                                                                                                                           >  1:508548/1‑251 (MQ=255)                                                                                                                           aaaaaCCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCATAACGGCAAAAGCAccgcc                                                                                                                         <  1:501594/250‑1 (MQ=255)                                                                                                                                ccTTTTTGCCGGAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTT‑CCAACTTACTGATTTAGTGTATGATGTTGTTTT‑TGAGGTGCTCCAGTGGCTGCTGTTTCTATCAGCTGTCCCGCCTGTTCAGCTACTGACGTGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑t                                                                                                                  <  2:79004/251‑1 (MQ=255)                                                                                                                                          gTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTAtc                                                                                                        >  1:295745/1‑251 (MQ=255)                                                                                                                                            aaaTGAATTTTATAGAAATAATGATGATTTCATAAACCCTTATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTGCAATATT‑TACTTATGTCATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCGGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTAtctc                                                                                                      <  2:353915/251‑1 (MQ=255)                                                                                                                                               tGAATTTTATAGAAATAATGCTGATTTCATAAACCCTGCTCTACAAGCACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TAATTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTTTATCAGCTGTCCCTCCTGTTTAGCTTCTGACGGGGTGTTGCGTACCGGCAAAAGCCACGCCGGACA‑TAAGCGCTCTCTCTGc                                                                                                   >  2:498257/1‑251 (MQ=21)                                                                                                                                                gAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAATAACGGGTAGTGATCGGTGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGc                                                                                                   <  2:254352/250‑1 (MQ=255)                                                                                                                                                gAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGct                                                                                                  >  1:220179/1‑251 (MQ=255)                                                                                                                                                           aaaTAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGt                                                                                       >  1:304530/1‑251 (MQ=255)                                                                                                                                                                    tgatTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATgg                                                                              >  1:316270/1‑251 (MQ=255)                                                                                                                                                                     gatTTAATCAACCATGATCTCCAAGGACGGATAGTGCTCGCGGATTATAGCAACCCAATATT‑TACCTACGACATTAAAGGTAGTAATG‑ACAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGAACGTAACCGCAACACCACCGCCGG‑CACTCAGCGCTATCTACGCTCTCCCTGCCGTaaaaaatagc                                                                             >  2:259321/1‑245 (MQ=2)                                                                                                                                                                      atTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGc                                                                             >  1:463374/1‑250 (MQ=255)                                                                                                                                                                               aCCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGtt                                                                   <  1:322751/251‑1 (MQ=255)                                                                                                                                                                                     aTCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGATTT‑TGAGGTGCTCCAGAGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGATATCTCTGCTCTCACTGCCTAAAAACATAGACCCTGCAGTTCACtt                                                              >  2:410919/1‑250 (MQ=18)                                                                                                                                                                                       cTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTac                                                            >  1:565405/1‑250 (MQ=255)                                                                                                                                                                                        tACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTacac                                                          >  2:92262/1‑251 (MQ=255)                                                                                                                                                                                           aaGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTg                                                                                                                                                         <  1:352296/154‑1 (MQ=255)                                                                                                                                                                                                 ggTTAGTGTTCGGTGATTATAGCATTTAAATATTGTA‑TTAGGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGGGAATGATGGTGTTTT‑TGGGGTGCGCCAGTGGCTTCTGTTTCTATCAGCGGTCCCTCCTGTTCAGCTACTGTCGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTTTGCTCTCACTGCCGTAAAACATGGCAACGGCAGTTCTCTTACACCGCTtctta                                                 <  2:295745/251‑3 (MQ=14)                                                                                                                                                                                                 ggTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTtctc                                                  >  1:439431/1‑250 (MQ=255)                                                                                                                                                                                                              ggATTATAGCCTTTCAATATT‑TACTTAGGACTGTAAAGGTGATG‑TGTCCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTTTTTTTCTATCAGCGGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCCCCGCCGGACA‑GCAGCGCTATCTCTGCTCTCCCTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCAc                                    <  2:439431/251‑1 (MQ=14)                                                                                                                                                                                                                 ttATAGCATTTCAATATT‑TACTTAAGACATTAAATGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCACTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACAGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGCTCACTTACACCGCTTCTCAACCCGATACGCAcc                                   >  2:148096/1‑249 (MQ=255)                                                                                                                                                                                                                     aGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGaaa                              >  1:191531/1‑250 (MQ=255)                                                                                                                                                                                                                         tttCAATAGT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGAATTGGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTCGCTTCTGATTCTCTCAGATGTCCCTCCTGTTCAGCTACTGCAGGGGTGGTGCGTTACGGCAAACACACCGCCGGACA‑TCCGCGCCATCTCTGGTCTCACTACTGTAAAACATGGCCACTGCAGTTCCCTTCAACCGCTTCTCAACCCGGTACGAAACAGAAACTCAt                         >  2:279261/1‑251 (MQ=14)                                                                                                                                                                                                                                      tttaggACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGGTTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGTTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCCCTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAAc                                               <  2:373693/212‑1 (MQ=255)                                                                                                                                                                                                                                      cTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAAc                                               >  1:373693/1‑217 (MQ=37)                                                                                                                                                                                                                                        tATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TAAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGCCGGGGTGGTGCGTAACGCCAAAAGCACCGCCGCACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGTTATGGCCATg            >  1:62188/1‑250 (MQ=255)                                                                                                                                                                                                                                            aCATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCCCCAGAACATCATTGATATGGCCATGAATgg       >  2:17942/1‑251 (MQ=17)                                                                                                                                                                                                                                             aaatAAAGGTGTAGCTG‑CCAATTTCATGATGTAGTGTATGATGGTGTTTTGTG‑GTTGCTCCAGTGGTCTCTGTTTCTACCAGCGTTCCCTCCTGTGCAGCGACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCTCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGc      <  2:421232/248‑1 (MQ=11)                                                                                                                                                                                                                                                tAAAGGAGATGCTG‑CCAAATTACTGATTTAGTGAATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTCTCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAATCACCGCCGGACA‑TCAGCGCTATCTCTGCCCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGATTATCAACCCGGTACGCACCAGACAACCATTGATATGGCCATGAATGGAGtt   >  2:242328/1‑251 (MQ=11)                                                                                                                                                                                                                                                 aaaGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTg  >  1:52850/1‑251 (MQ=11)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                           GTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATT‑TACTTATGACATTAAAGGTGATGCTG‑CCAACTTACTGATTTAGTGTATGATGGTGTTTT‑TGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACA‑TCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG  >  NC_000913/3583186‑3583675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.