Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	1,199,869	+GA :: IS3 (+) +4 bp	coding (935‑938/1128 nt)	intE ←	putative integrase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	315229 =	NA (NA)	35 (0.700) +TC	33/480	0.4	100%	noncoding (1/1255 nt)	IS3	repeat region
	?	NC_000913	= 1199872	0 (0.000)					coding (935/1128 nt)	intE	putative integrase
*	?	NC_000913	1094245 =	NA (NA)	21 (0.420)	21/484	0.9	100%	noncoding (1258/1258 nt)	IS3	repeat region
	?	NC_000913	1199869 =	0 (0.000)					coding (938/1128 nt)	intE	putative integrase

ACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/315465‑315229 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAACAACAAACCGATCGTTATCATGATGATCGAGGTAAAGGATGGAGCAAAGTAGCGTTGTGAACCTTTAAGCATCTCAACGCCACATTGAATTTCTCACCGCA  <  NC_000913/1199872‑1199638                                                                                                                                                                                                                                              ||                                                                                                                                                                                                                                            ACGTCTACTGATTTTGCTCTTTACTGCGCCAGTTGTAGAGTTGTGCTTCATACTGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTAACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGATCCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTTTCCACTATTGCTGGGTAAGATCAAGCGcgcgatt                                                                                                                                                                                                                                 >  2:525000/1‑244  CGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTT                                                                                                                                                                                                                                <  1:177403/251‑1   GTCTGCTTATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCTTACATGCTGAGTTCTCGGGCTGCTGCAGTAACACCGATGCGTTCAGCAAGCTTCAGTGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGTGTTTTTTACTGGTTGATCCTGTTTTTGTCATGTGAGTCACCTCTGTCTGAGAGTTTACGCACTTAGCCGCGTGTCCACTATTGCTTGGTAAGATCAAGCGAGAGATTTA                                                                                                                                                                                                                               <  2:65707/251‑1     CTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGCGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGC                                                                                                                                                                                                                             >  2:346139/1‑251                           CGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGT                                                                                                                                                                                                       <  1:45603/251‑1                            GCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTT                                                                                                                                                                                                      <  1:250315/251‑1                                      GAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGTGCTTCTCTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGGTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCTCTTAGCCGCGTGTCCGCTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGAC                                                                                                                                                                                            <  2:461406/251‑1                                                      AGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGG                                                                                                                                                                            >  1:208099/1‑251                                                             GTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGCGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTAT                                                                                                                                                                     >  1:360713/1‑251                                                             GTTCACGGGATGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTAT                                                                                                                                                                     >  2:74328/1‑251                                                                aACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGTCTTCACTGCGAAATTCAGGCGAAGGCTTGTTACGGGGTTTTGTACTTGTTGAGACTGTTGTTGTCATGTGAGTCCCCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAGCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATTAGCAAAGGTCTTTATCTG                                                                                                                                                                  <  2:221596/250‑1                                                                CACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTG                                                                                                                                                                  >  1:507323/1‑251                                                                              GTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAA                                                                                                                                                    <  1:430887/251‑1                                                                                    CCGATGCGGTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGGATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCCTGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAca                                                                                                                                                >  2:408805/1‑247                                                                                           GTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAG                                                                                                                                       <  1:336365/251‑1                                                                                            TTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTT                                                                                                                                         >  1:91913/1‑248                                                                                                        CAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAAC                                                                                                                           <  1:197102/250‑1                                                                                                               TCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTG                                                                                                                     <  1:297056/249‑1                                                                                                                    tCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCAT                                                                                                                <  1:525000/248‑1                                                                                                                             AGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGTTACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAAC                                                                                                      >  1:430419/1‑250                                                                                                                                 GAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAACAACA                                                                                                  >  1:159980/1‑250                                                                                                                                   ATGCTGTTTAAGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGAATGGGGAGAGGGTTCACCTGCGACATTCAATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAAAACAAAAACAAA                                                                                                >  2:258127/1‑250                                                                                                                                    gagttttcagGGGGTTTTTT‑CTGGTTTATACTGGTTTTGTCAGTTGAGTCACCGCTGCCTTGTAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGTTAAGATCAAGCGCGAGATTTAGCAAGAATTGACTGGGGAGATGGTTCACCTGCGACATTCCATTAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGCCATAAAACACAACCACAAACCG                                                                                             <  2:495501/241‑1                                                                                                                                    gGCTGTTTACGGGGTTTTTTACTGGTTGATTCTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAATATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAATGTCGTTATCTGAACGTCGTTATAAAGAACATGTGTTAGACACACAAAAACTACTTTGACATAAAACACAACAACAAACC                                                                                              <  2:30135/250‑1                                                                                                                                     GCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAACAACAAACC                                                                                              <  1:185924/250‑1                                                                                                                                                  TTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAACAACAAACCGATCGTTATCATG                                                                                 >  1:119287/1‑250                                                                                                                                                      TTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGG                                                                                                                                           >  1:453221/1‑188                                                                                                                                                      TTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCGCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGG                                                                                                                                           <  2:453221/188‑1                                                                                                                                                                ATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGCTCAAGCGAGAGCTTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAACAACAAACCGATCGTTATCATGATGATCGAGGTAA                                                                    >  1:358247/1‑249                                                                                                                                                                              ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAACAACAAACCGATCGTTATCATGATGATCGAGGTAAAGGATGGAGCAAAGT                                                     >  1:208296/1‑250                                                                                                                                                                                        aCTCTGACGGAGAGTTTACTTTCTTAGCCGCGTGTCCACTATTGCTGGGTAAGAGCAAGCGAGATATTTAGCAAGAATTGACTGGGGAGAGGGTTCATCTGCGACATTCCATGAGCGAATGTCGTTATCTGAACGTCTGTATAAAGAACAGGGGTTATACACACAAAAACTACTTGGTCAAAAAACACAACAACAAACCGATCGTTATCATGATGAGCGAGGTAAAGGATGTAGCAAAGTAGCGTTGTGAA                                          <  2:357760/250‑1                                                                                                                                                                                                    AGTTTACTCACTTAGCCGCGTGTCCACTATTGCGGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAACAACAAACCGATCGTTATCATGATGATCGAGGTAAAGGATGGAGCAAAGTAGCGTTGTGAACCTTTAAGCATC                              <  2:91913/251‑1                                                                                                                                                                                                                     GCGTGTCCACTATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAACAACAAACCGATCGTTATCATGATGATCGAGGTAAAGGATGGAGCAAAGTAGCGTTGTGAACCTTTAAGCATCTCAACGCCACATTGAAT             <  1:346139/251‑1                                                                                                                                                                                                                               TATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAACAACAAACCGATCGTTATCATGATGATCGAGGTAAAGGATGGAGCAAAGTAGCGTTGTGAACCTTTAAGCATCTCAACGCCACATTGAATTTCTCACCGC   >  1:353863/1‑251                                                                                                                                                                                                                                ATTGCTGGGTAAGATCAAGCGAGAGATTTAGCAAGAAGTGACTGGGGAGAGGGTTCCCCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAACAACAAACCGATCGTTATCATGATGATCGAGGTAAAGGATGGAGCAAAGTAGCGTTGTGAACCTTTAAGCATCTCAACGCCACATTGAATTTCTCACCGCA  <  1:21140/251‑1                                                                                                                                                                                                                                              ||                                                                                                                                                                                                                                            ACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/315465‑315229 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCGAGAGATTTAGCAAGAATTGACTGGGGAGAGGGTTCACCTGCGACATTCCATGAGCAAAGGTCTTTATCTGAACGTCTGTATAAAGAACAGGGGTTAGACACACAAAAACTACTTGGTCATAAAACACAACAACAAACCGATCGTTATCATGATGATCGAGGTAAAGGATGGAGCAAAGTAGCGTTGTGAACCTTTAAGCATCTCAACGCCACATTGAATTTCTCACCGCA  <  NC_000913/1199872‑1199638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.