Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,627,668	G→C	P118P (CCG→CCC)	nadR →	DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,627,668	0	G	C	100.0%	82.7 / NA	27	P118P (CCG→CCC)	nadR	DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (11/16);  total (11/16)

ATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTACCCACTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTAT‑CCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACAC‑CTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCC  >  NC_000913/4627424‑4627910                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     aTGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTg                                                                                                                                                                                                                                                <  2:541912/251‑1 (MQ=255)                  cccAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCAGTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCgctg                                                                                                                                                                                                                               <  1:280212/251‑4 (MQ=255)                    cAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGt                                                                                                                                                                                                                             >  1:30919/1‑251 (MQ=255)                       cgtgcAAAAGCTGGAGGCGTTTCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCGTTGGTGTGGTAGGCGGTAAGTTCTACCCGCTGCATACCGGACATATCTGCCTTAGCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATGCCCTCGATCGCGCGTTGGTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTAt                                                                                                                                                                                                                          <  1:624189/248‑1 (MQ=255)                                   ggAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACtttt                                                                                                                                                                                                               >  1:346832/1‑250 (MQ=255)                                            gCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAg                                                                                                                                                                                                      <  1:89061/250‑1 (MQ=255)                                             cACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCCTTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGCTACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGa                                                                                                                                                                                                     >  1:288179/1‑250 (MQ=255)                                                                            agaagaAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTTCCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCTCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAagag                                                                                                                                                                     <  1:433462/251‑1 (MQ=255)                                                                                  aaaccattggtttggTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATg                                                                                                                                                               <  2:30919/237‑1 (MQ=255)                                                                                            tgtggTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTAT‑c                                                                                                                                                    >  1:60292/5‑251 (MQ=255)                                                                                                 tATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGATTTGACGATACACGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATCTCAGAAAAATATTCGCATTCATGCTTTCAACGACGAGGGCAAGGAGCAGTAT‑CCGCAc                                                                                                                                               >  2:676904/1‑251 (MQ=255)                                                                                                  aTTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTAT‑CCGCACg                                                                                                                                              <  1:88480/251‑1 (MQ=255)                                                                                                   ttCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACt                                                                                                                                                                                                                  >  1:678857/1‑183 (MQ=255)                                                                                                   tgcGGTAAGGTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAATACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACt                                                                                                                                                                                                                  <  2:678857/181‑1 (MQ=255)                                                                                                       gTAAGTTCATCCCGCTGCATATCTCACATATCTACCTTATTCAGCGCGCCGGTCGCCAGTGTGACGAACTGCAGATCCTTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAATCTTTTAAATATCAGAAAAATATTCGCTTGCATGCTTTCAACGAAGAGGGCATGGAGCCGTAT‑CCGCACGGCTgg                                                                                                                                         <  2:486964/251‑1 (MQ=255)                                                                                                                  ccgcTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGCAGAGGGCATGGAGCCGTAT‑CCGCACGGCTGGGATGGGTgg                                                                                                                                >  2:544492/4‑249 (MQ=255)                                                                                                                       gcatatctgACATATCTACCTTATCCAGCGCGCCTGTAGCCATGTGGACGAACTGCATAGCATTATGTGTTGTGACGATCCTCGCGATCGCGCGGTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCTCCTGGCCTGATCGTCTGCTCTGGTTATTACAATCTTTTAAATATCAGAAAAATATTCGCATGCATGCTTTCAACGAAGAGGTCATGGAGCC‑TATTCCGTACGGCTGGGATGTGTGGatcatcg                                                                                                                         <  2:679337/243‑7 (MQ=255)                                                                                                                         aTACCGGACATATCTACCTTAGCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTAT‑CCGCACGGCTGGGATGTGTGGAGCAACGGc                                                                                                                       <  1:146225/251‑1 (MQ=255)                                                                                                                                  atatCTACCTTATCCGGCGTGCCGGTTGCCACGGTGACGAACTGCATATCATTATGGGTTGTGACGACACACGTGATTGTCCGTTTTTGGAAGACAGCGCTAGTTCGCAGCAGCCCACCGTGCCGGATCTTCTTCTCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATGCATGCTTTCAACGAAGAGGGCATGGAGCCGAAT‑CCGTACGGCTGTGATGTGTGGAGCAACGGCATCaaaaat                                                                                                              <  2:673933/251‑2 (MQ=255)                                                                                                                                        aCCTTATCCAGCGCGCCTGGTGCCAGGTTGACGAGCTGCATATCACTATGGGATTTGACGATACCCGCGATCGCGCGGTGTTTGAAGACATCGCTATGTCGCAGCAGCCCACCGTGCCGGAACGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAAGATTCTCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTAT‑CCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATg                                                                                                        <  2:288179/251‑1 (MQ=255)                                                                                                                                        aCCTTAGCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTAT‑CCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTa                                                                                                          <  2:60292/249‑1 (MQ=255)                                                                                                                                                 aGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTAT‑CCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGaaa                                                                                                 >  1:672892/1‑249 (MQ=255)                                                                                                                                                                    tGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGGTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTAT‑CCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGATTCAGCCGgacctg                                                                             <  1:629942/250‑1 (MQ=255)                                                                                                                                                                                       aTGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCTATATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGATCCGTAT‑CCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGTGATTCAGCCGGACCTGATCTACAC‑CTCGGaagaag                                                         <  1:51231/250‑1 (MQ=255)                                                                                                                                                                                                   gATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGAATGGAGCCGTAT‑CCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGATTCAGCCGGACCTGATCTACAC‑CTCGGCAGAAGCCTATGCGCcac                                             >  2:202391/1‑250 (MQ=255)                                                                                                                                                                                                               cgcgcaTTGTTTGACGACAGCGCTATGTCGCAGCAGCCCACCGTGCCGGATCGTCTGCGCTGGTTCTTCCAAACTTTTACATATCAGCAACATATTCGCATTCATGCTTTCAACGAAGAGGGAATGGAGCCGTAT‑CCGAACGGCTGGGTTGTGTGGAACAACGGCATCACAAAGTTTATGGCTGCAAAAGGGATTCGGCCGGGCCTGAT‑AAAACACTCGGAAGAAGCCGATGACCCCCAGTATATggcac                                 >  2:426006/1‑247 (MQ=255)                                                                                                                                                                                                                                             cagcagCCCACCGTGCCGGATCGTCTGCGCTGGTTATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTAT‑CCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGATTCAGCCGGACCTGATCTACAC‑CTCGGAAGAAGCGAATGCGCCACAGTATATGGAACATCTGGGGATCGATACGGTGCTGGTCGATcc  >  2:362649/1‑251 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     ATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTACCCACTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTAT‑CCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACAC‑CTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCC  >  NC_000913/4627424‑4627910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑