| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 5,442 | T→C | L70P (CTA→CCA) | yaaX → | DUF2502 domain‑containing protein YaaX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 5,442 | 0 | T | C | 96.3% | 71.0 / ‑6.3 | 27 | L70P (CTA→CCA) | yaaX | DUF2502 domain‑containing protein YaaX |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (8/18); minor base A (0/1); total (8/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGC‑TGCGGAAATTACGTTAGTCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCTAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGC > NC_000913/5218‑5678 | aTAAAAGGAGTAACCAATAAAAAATATGCAACCTCTCGTCCCCGCATTTTCCCTGGTTCTGTTCGCTCCAAGGGCAGCCCAGGC‑TGCGTAATTTACGTT‑GTCCCCGTCAGTAAAATAACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACGGGCGCGCCCCCGGCTGGTGGAAA‑CAACATTATGAAGGGCGAGGCACTCGCGGCC‑CCCCCC‑CCGGCCCGCCGCCACCGCCGCGcc < 2:146654/251‑1 (MQ=255) aGGAGTAACCAATTAAAAAGATGCAATCTATCGGACTCGCACTTTCCCTGGTCCTGGGCGCTCCCATGGCAGCACAGGC‑TGCGGAAATGACGTTAGTCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCGCTGGCGCGACCACGGGTGGTGGAAA‑CAACATTATGAAGGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCAt < 1:426577/251‑1 (MQ=255) aaCCTATGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGC‑TGCGGAAATTACGTTAGTCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGaaa < 1:120760/251‑1 (MQ=255) agcGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCATAGGC‑TGCGGAAATTACGTTAGTCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGGGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCAcg < 1:86102/245‑1 (MQ=255) cGCACTTTCCCTGGTTCTGGTCGTACCCATGGCAGCACAGGC‑GGCGGAAATTACGTTAGTCCC‑GGCAGTAAAATTACAGATAGGCGATCGTGATAAGCGTGGTTATTACGGGGATGGAGGTCCCTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAAGGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTc < 1:352354/251‑1 (MQ=255) ccTGGTTCTGGTCGCTCCCATGGCAGCACAGGC‑TGCGGAAATTACGTTAGTCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAAc < 1:569318/251‑1 (MQ=255) cccATGGCAGCACAGGCGTG‑GGAAATTACGTTAGTCCC‑GTCAGTAAAATTACAGACAGGCTATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGAc < 1:158798/251‑1 (MQ=255) ggC‑TGCGGAAATTACGTTAGTCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAA‑CACCGCTAAATAACAAAAGCCGGGT‑aa > 1:435364/1‑250 (MQ=255) aTTACGTAAGGCCC‑GCCAGGAAAATTACAGATAGGGGATCGGGATAATGGTGGCAATCCCTGGGTGGGAGGTCACTGGCGCGGCCTGGGCTGGTGGAAA‑CAACATTATGAATGGCGGGGAAATCGCTGGC‑ACCCAC‑ACGGCCCGCCGCCGCCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCAt < 2:86652/251‑1 (MQ=255) gTTAGTCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTTCAGGCAAACAT‑CACCGCTAAATGGCAAATGCCGGGT‑AACAATCCGGCATTCAgc > 1:548384/1‑251 (MQ=255) gTTAGTCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAACCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCATTCAgc < 1:201722/251‑1 (MQ=255) tAGTCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCATTCAgcg < 1:670829/250‑1 (MQ=255) tAGTCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGAGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGGCATGGTCCCGGCAAACAAACACC‑CCAAATGACCAATGCCGGGTGAACAACCCgcaattacccc > 2:313034/1‑241 (MQ=255) tCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGGCATTGTCCAGGCAAACAT‑CACCGCTAAATGACAAAAGCCGGGT‑AACAATTCGGCATTCCACGCCTg > 1:173810/1‑251 (MQ=255) cccagTCAGTAAAAGTACATAGAGGCGATCGTGATAAGTGTGGATATTAAGGGGATGGAGGTCCGTGGCGCGACCACGGCTG‑TGGAAAACAACATTATGAAGGGCAAGGTAAGC‑CTTGC‑CCCCACCAGGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCGCAGGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CGCCGCTAAAGGACAAAGGCCGGGT‑AAAAATCCGTCATTCAGCGCCTg < 2:319119/247‑1 (MQ=255) cAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCCGGCAAACAT‑CACCGCTaa > 1:206279/1‑195 (MQ=255) cAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGAGGGAGGTCCCGGGCGCGCCCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTaa < 2:206279/195‑1 (MQ=255) aaaggcttgcGTGAAAATCGTGGGTATTGCTGGGAGGGAGGTCACTGGCGCGCCCACGGTGGGTGTAAC‑CAACATTAGGATTGGGGGGGCAATCTCGGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAG‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCtt < 2:660139/242‑1 (MQ=255) aaGGCGATCGTGATAACCTTGGCTATTACTGGGATGGAGGTCACTGGCGCGCCCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGCCCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTa < 1:633388/250‑1 (MQ=255) ggcgctataagggggATGGGTGTCACGGGCGCGACCACGGCTGGGGAAAA‑CACCTTTATAAAGGGCGAGGAAATCGTTGGC‑CCCCCC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAAGGCCGGGT‑AACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTGAAtgc < 2:453377/239‑3 (MQ=255) ggCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGACATGGGCCAGGCAAACAT‑CACCGCCAAATTACAAAAGCCGGGG‑AACAATCCGGCCTTCCGCGCCTGATGCGACGCTGGCGGGTCTGATCAgggccacgcgaattatc > 1:415822/1‑236 (MQ=255) gaaggAGGTCCCTGGGGCGCCCACGGCGGGGGGAAA‑AAACATTAGGAATGGCGATGCAATCGCAGGCCACCAAC‑‑GGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCGTATCAGGCCTACGTGAATTCTGCTATATATTGaa < 2:105024/248‑1 (MQ=255) ggAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAAGGGCGAGGCAATCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTAt < 1:607211/217‑1 (MQ=255) gcgACCACGGCTGGTGGAAA‑CAACATGTGGAGGGGCGAGGCAATCGCTGGC‑CCCCAC‑ACGGACCGCGGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTGAATTCTGCAATATATTGAATCTGCATGCTTTTGTa < 2:80783/251‑1 (MQ=255) aaTCGCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCATTCAGCGCCTGATACGACGCTGGCGCGTCTTATCAGGCCTACGTGAATTCTGCAATATATTGAATCTTCATGCTTTTTTAGGCCGGATAAGGCGTTCACGCCGCCTCCGGCATTGACTGc > 1:442143/1‑250 (MQ=255) gCTGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCa < 1:191657/161‑1 (MQ=255) tGGC‑ACCCAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGG‑AAc > 1:62399/1‑115 (MQ=255) | ATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGC‑TGCGGAAATTACGTTAGTCCC‑GTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAA‑CAACATTATGAATGGCGAGGCAATCGCTGGC‑ACCTAC‑ACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACAT‑CACCGCTAAATGACAAATGCCGGGT‑AACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGC > NC_000913/5218‑5678 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |