| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,546,272 | A→C | T393P (ACC→CCC) | fimD → | type I fimbriae usher protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,546,272 | 0 | A | C | 93.5% | 166.0 / NA | 62 | T393P (ACC→CCC) | fimD | type I fimbriae usher protein |
| Reads supporting (aligned to +/- strand): ref base A (4/0); new base C (31/27); total (35/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTCACTATTAAACAAAATGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACACTTCCCGATGACAGTCAGCATGACGG‑ACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAATCAGGCACGAAT > NC_000913/4546025‑4546514 | ggTCACTATTAAACAAAATGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAcccc < 1:402556/251‑1 (MQ=255) ttAAACAAAATGGGAATGACATTTATAATAGTACGGCGCCACCGGAGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGAGCATACTCGTTATTCCATTACAGCAGGAGAATACCGAAAAGGAAATGAGCAGCCGGACAAAACCCGCTTTTTc > 2:579563/1‑251 (MQ=255) aaaaTGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGt > 1:185064/1‑251 (MQ=255) gggTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGGAATGCGCAGCAGGAAAAACCCCGCTTTTTCCa > 2:288555/1‑242 (MQ=255) gggTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCa < 1:288555/242‑1 (MQ=255) ataataGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCtt > 1:444674/1‑251 (MQ=255) tactaGTACGGTGCCACCGGGGCCTTTTACCATCAACGATCTCTATGCCGCAGGTAATAGTGGAGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGAGCATACTCGTTATTCCATTACGGCAGGAGAATACCGGCGGGGACATGAGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTc > 2:408371/4‑251 (MQ=255) aataGTACGGTGCCACAGGGGCCTTTTACCATCAACGATATCTATGCAGCAGGTAATAGTGGTGACTTGCAGGTAACGAGCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGccctc < 2:330641/250‑4 (MQ=255) aCGGTGCCACCGGGGCCTTTTTCCAACAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCGGATTTTTACCGTACCCTATTCGTCAGTCCCTCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTTGAAATGCGCAGCATGAAAAACCCCTCTTTTTCCAGAGTACATTACTCCACGTCCTTCCggctg < 2:435472/250‑1 (MQ=255) aCGGTGCCACCGGGGCCTTTTACCATCCACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCggctgg < 2:368621/251‑1 (MQ=255) aCGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCggctg < 1:461878/250‑1 (MQ=255) cGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGACATGCGCAGCAGGGAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCggctggc > 1:329219/1‑251 (MQ=255) aCCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGGGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCg > 2:119308/1‑238 (MQ=255) aCCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCg < 1:119308/238‑1 (MQ=255) tgCCTTTTACAATCAACGATCTCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACAATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACAGTACCCTATTCGTCAGTCCCGCTTTTGCAACGGGAAGGGCATACTCGTTATTCCATTACGGCAGGGAAATACCGTTGTGGGAAAGCGCAGCTGGAAAAAACACGCATTTTGCAGAGAACAGTACTCCAACGCCCTCCGGATGGCTGGAC‑Aattatt > 2:462790/2‑247 (MQ=255) ttttACAATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCCGAAAGAAAAACCCCCCTTTTTCCAGAGAACATTACTCCACGGCCATCCGGCTGGGTGGAC‑CATATAtggtg > 2:104256/1‑251 (MQ=255) cAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTACCGATCAAAGCGGCTGACGGCAGCACGCAGATTTTTACCGTACACTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAACACCCCGCTTTTTCCAGAGAACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAAc > 1:287831/1‑251 (MQ=255) aCGATATCTATGCCGAAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCATCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATCCTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTg < 2:329219/251‑1 (MQ=255) tatCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCgg > 1:73809/1‑251 (MQ=255) gCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTa < 1:423425/251‑1 (MQ=255) gTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCt > 1:563856/1‑251 (MQ=255) aaTAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCttt < 1:140206/251‑1 (MQ=255) gggtgACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACGCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTTCTTTTAAtt < 2:389136/250‑1 (MQ=255) aCTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTGTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGt < 1:239952/251‑1 (MQ=255) cAGGTAACGATCAAAGCGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCgg > 1:586775/1‑251 (MQ=255) aaCGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGa‑aa > 1:583535/1‑250 (MQ=255) aCGATCAAAGAGGCTGACGGCAGCACGCAGATTTTGACCGGTCCCTATTCGTCAGTCCCGCTTTTGCAACGGTAAGGGCATACTCGGTAATCCATTACGTCAGGAGGATGCCGTAGTTGAAATTCGCAGCAGGAAAAACCCCGCTGTTTCCAGAGTACATTACTCCACGGCCTTCCGGCGGGCTGGAC‑AATATATTGTGTATCGCAACTGGCGGATCGGTATCGTGCTTTTAATTTCGGTATCGGGt‑aaaa < 2:338951/251‑1 (MQ=255) taTCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTCTTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGACTTCCGTAGTGGAAATACGCAGCCAGAACAACCCCGCTTTTTCCAGAGTACATTCCTCCCCGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCCACTGGCGGCTCATTTTCTTGCTTTTAGTTTCCGTATCgatcggc > 2:246692/2‑242 (MQ=255) gATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATGCGTCAGGCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTAt < 1:246692/240‑1 (MQ=255) aTCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATAGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑t > 1:601115/1‑251 (MQ=255) cAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑Tgg > 1:302155/1‑251 (MQ=255) agGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCGTTTTCCAGAGTACATTACTCCCCGGCCTTCCGGCTGGCTGGAC‑AATATATGGGGGAACGCCACTGGCGGATCGTTATCGTGCTTTTAATTTCGTGATCGGGA‑CAAACAGTggggc > 1:294201/1‑249 (MQ=255) ggCTGACGGCAGCACGCAGATTTTTACAGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGAATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGGCCATTCCTCCACGGCCTTCCGGCTGGCTGGGC‑CATATATGGTGGAACGACACTGGCGGATCGTTATTGTGCTTTTAATTTCGGACTCGGGC‑AAAACA‑TGGGGGCAc > 1:625996/1‑251 (MQ=255) gCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCATGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACt < 1:140207/251‑1 (MQ=255) gtGACGGCAGCACGCGGCTTTTTACCTTACCCTATTCGTCTGTCCCGCTTTTGCAACGTGAAGGGCATACTCTTTATTCCATTGCGGCAGGAGAATACCGTTGTGGAAATGCGCAGCAGGAAAAGCCCCGCTTTTTCCAGATTACATTACTCCACGGCCTTCCGGCTGGCTTGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGC‑AAATCA‑TGGGGTCACTg < 2:625996/250‑1 (MQ=255) ggCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGC‑AAAACA‑TGGGGGCACTGGgcgc > 1:347500/1‑251 (MQ=255) gcaCGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGCAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGACCTGCGCAGAAGGCAAAACACCGCTTTTTCCAGAGACCATTACTCAACGGCCTTCCGGCTGGCTGGAC‑AATATCTGGAGGAACGCAACTGGCGGATCGTTCTCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGctctt > 1:95471/1‑250 (MQ=255) caCGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCCCGGCCTTCCGGCTGGCTGGCC‑AATATATGGTGGTACGCCAATGGCCGGTCGTTATCGGGTTTTTAATTTCGGTATCGGGA‑GAAACA‑TGGGGGACCTGGGCGgtcttt > 2:180064/1‑249 (MQ=255) cAGATTTTTACCTTACCCTATTCGTCAGTCCCTCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATGTCGGTATCGGGA‑AAATCA‑TGGGGGCACTGGGCGCtctgtct < 2:9102/249‑1 (MQ=255) ccttcactccgctcttccgatcttCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑GGGGGGCACTGGGCGCTCTGTCtgtg < 2:552348/228‑1 (MQ=255) gATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTgg < 1:111008/251‑1 (MQ=255) aTTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATc < 1:517018/187‑1 (MQ=255) ttttACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGat > 1:193397/1‑250 (MQ=255) aCCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAgg > 1:94618/1‑251 (MQ=255) gTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACACCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑CATATATGGTGGAACGCAACAGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTcc > 1:308298/1‑250 (MQ=255) tCAGTCCCGCTTTTGCCACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCtgtg > 1:552348/1‑228 (MQ=255) tCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACACtt > 1:138248/1‑251 (MQ=255) ttttGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGctggctgg < 1:392088/125‑1 (MQ=255) tttGCAACTTGAAGGACATACGCGTTATTCAATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTGTAATTTCGTTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGGGGATATGCCGCAGGC‑TAATTCcatacgtgccgat < 2:446507/250‑12 (MQ=255) tGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACACTTCCCGATGa < 1:555855/250‑1 (MQ=255) gCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACACTTCCCGATGAcc > 1:482626/1‑250 (MQ=255) cAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCAGCTCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCCCTTGGCGCTCTGTCTGTGGATATGGAGCAGGC‑TAATTCCACACTTCCCGATGAc > 1:419397/1‑249 (MQ=255) gAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGGGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TCATTCCACACTTCCCGCTGACAGTCAga > 1:286925/1‑249 (MQ=255) aGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCAACGGCCTTCCGGCTGGCTGGAA‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGC‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACACTTCCCGATGACAGACAGCATg > 1:386349/1‑251 (MQ=255) cATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACACTTCCCGATGACAGTCAGCATGACgg < 1:104256/251‑1 (MQ=255) gTTATTCCATTACGGCAGGAGTAGACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGTGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACATTTCCCGATGACAGTCAGCATGACGG‑ACAATCg < 1:554294/251‑1 (MQ=255) gTTATTCCATTACGGCAGGAGAATACCGTAGTGGAACTGCGCATCAGGAAATAACCCGCTTTTTACAGAGTACATTACTCCACGGCCCTCCGGCTGGCTGGACCAAT‑TATGGTGGAACGCCACTGGCGGCTCGTTTTCGGGATTTTAATTTCGGGCTAGGGACAAAAC‑‑TGGGTGCACGGGGCGTTCTCTCTCGGGGTATCACGAAGGCATAATTC‑ACACTTTCCGCTGACAGTCAGCATGACGC‑ACAATc > 2:335968/1‑250 (MQ=255) ccATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AACACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCCGGC‑TAATTCCACACTTCCCGATGACAGTCAGCATGACGG‑ACAATAGGTGCgg > 1:316111/1‑250 (MQ=255) aGTGGAACTACGCAGCAGGAAAAACCCAGAATTTTCCAGAGTACATTAATCCACGGCATTACGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGAATAGGGA‑AGAAAA‑TGGGGGCAATGGACACTGTGTGTGTGGATATGACGCATGC‑TCATTCAACACTTCCCGATGACAGTCAGCATGACGGGACA‑TCGGTGAGCTTTATCTCTAACAAATCGCtac > 2:674367/1‑248 (MQ=255) tGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACACTTCCCGATGACAGTCAGCATGACGG‑ACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATg > 1:620148/1‑251 (MQ=255) aTGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACACTTCCCGATGACAGTCAGCATGACGG‑ACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAATCa < 1:4675/251‑1 (MQ=255) gcgcAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACACTTCCCGATGACAGTCAGCATGACGG‑ACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAATCAgg < 2:338110/251‑1 (MQ=255) agGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTTGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACACTTCCCGATGACAGTCAGCATGACGG‑ACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAATCAGGCACGAat < 2:563856/251‑1 (MQ=255) | GGTCACTATTAAACAAAATGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGAC‑AATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGA‑AAAACA‑TGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGC‑TAATTCCACACTTCCCGATGACAGTCAGCATGACGG‑ACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAATCAGGCACGAAT > NC_000913/4546025‑4546514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |