| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,276,422 | C→T | P318S (CCG→TCG) | pdeC → | c‑di‑GMP phosphodiesterase PdeC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,276,422 | 0 | C | T | 97.1% | 99.8 / ‑4.9 | 35 | P318S (CCG→TCG) | pdeC | c‑di‑GMP phosphodiesterase PdeC |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (19/15); total (20/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.21e-01 | |||||||||||
AACCCATTTTTATAATCATCTTATTTTTGCGTTGCCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATCCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATACGTCACGGTTGATAGCGCGAATCAATCAGAAAACAGAGCAATACGCGGTGCGTCCGCAGCAAATTAAATTTGAAGTGACTG > NC_000913/4276178‑4276656 | aaCCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCag < 1:203070/251‑1 (MQ=255) catcTTATTTTGGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGc < 1:583436/251‑1 (MQ=255) ttGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAagga < 1:420888/250‑1 (MQ=255) ccgGTATTGTGTGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGTGCAAGTAATGAATTCGGCAGAGTTTATGCCGCTGGCAGAAAAGGAGGGGATGATAGaa < 2:82126/251‑1 (MQ=255) aTTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAACAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATg > 1:290027/1‑251 (MQ=255) tCGACAAAACTATTTATCTCCCAAACGTAAATTTCACCGCGCACTCGAAAAACATCTACTTTGTCTATATTACCAGCAAATAATCGATATCAAAACAGAAAAATGTATCGACGCTGAAGCGTTGTTACGTTGGCCTGGAGAGCAGGGGCAAATAAAGAATTCGCCAGAGTTTATTCCACTGGCAGAAAAAGAGGGGATGATAGCACAGATAACTGATTATGTTATAGATATTGACTTCCGCGATcagtgcg > 2:177900/1‑245 (MQ=255) gACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGAAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGCACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGAt > 2:621222/1‑251 (MQ=255) cAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGACCAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGAtt > 1:674358/1‑250 (MQ=255) aaaaCTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTAc < 1:579720/251‑1 (MQ=255) aaCTATTTATCTCCAAAACGTAAATTGCAACGAGCCCTCGAAAAACATCAACTTTGGCTTTATTACCAGCCAATAAGCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGGTGTTACGTTGGCCGGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCt < 2:71032/251‑1 (MQ=255) ccAAACTTAAATGTCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTCTTTCCATCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGGTGTTACGGTGGCCTTGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGAGGATAGAACAGATAACTGATTATGTTATTGATATTGTCTTCCGCGATCTGGGCGATTACCTGGCTACACA‑ta < 2:615121/249‑2 (MQ=255) aaCGTAAATTGCAACGCGACATCGAAAAACCTCAAATTTGTCTTTATTACCAGCAAATAATCGATATCAAAACAGAAAAATGTATCGGAGCTGAAGCGTTGGTAAGTTGGCCTGGTGAGCAGGGGCACATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGTTCTGGGCGATTACCTGGCAacactagc > 2:535287/1‑243 (MQ=255) ccGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGAAGGGGCAAATAATGAATTCGGCAGAGTTTATTACGCTGGCAGAAAAGGAGGGGATGATAGACCAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑Tgt > 2:3219/2‑245 (MQ=255) aaaTTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAAATGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGTTTACCTGGCATCACA‑TGCCGATCGCt > 2:172339/1‑250 (MQ=255) aaCGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCt > 1:103554/1‑251 (MQ=255) aaCGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTAACTGGCAACACA‑TGCAGATCGCTATTTTTCt > 2:178152/1‑251 (MQ=255) tCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATACTCGCTCTCAAAACAGAACAATGTATCGGAGCTGAAGCGTTGTTACGTTGGCCTGGCGAGCAGGGGCAAATAATGAATTCGGAAGAGTTTATTCCGATGGCAGAAAAGGAGGGGATGATAGAAAAGATAACTGATTCTGTTATTGATAATGTCTTCAGAGATCTGAGCGATTACCTGGCA‑CACAATGCAGATACATATGTTTCTATTAActtg > 2:590939/1‑248 (MQ=255) aaaaaCATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCg > 1:18259/1‑251 (MQ=255) cAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGa < 2:571779/251‑1 (MQ=255) attaCCATCCAATAAGCGATATCAAAACAGAAAAATGTAGCGGCGCTGAAGTGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGTGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACTCA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGAttt < 2:674918/241‑1 (MQ=255) attaCCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGAttt > 1:674918/1‑241 (MQ=255) aGCCAATAATCTATATCAAAACAGAAAAATGTATCGGCGCTGAATCGTTGTTACGTTGGCCTGGTGAGGAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTTTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATTCGTCACGGTTg < 2:524572/251‑1 (MQ=255) cGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGa < 1:492748/144‑1 (MQ=255) cGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGa > 2:492748/1‑144 (MQ=255) aggggaaaagTATCGGCGCTGAAGCGTTGATCCGTTGGAGGAGTCAGCCGGGGAAAATAATGAAATCGGCAGAGTTTATTCCACTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTTTGTTATTTATACTGTGTTCCGAGATCTGAGCGATTACCTGTCGACAAA‑TGCAGCACGCTATTGTTCTTTTATCCGGTTGTCCTCCGTTTTCCATACATAACGGTTGATAGCGCAAATCAATCAGaa > 2:554095/10‑250 (MQ=255) gTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATACGTCACGGTTGATAGCGCGAATCAATCAGAAAACAGAGCaa < 1:72036/251‑1 (MQ=255) ggCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATCCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATACGTCACGTTTGATAGCGCGAATCAATCAGAACACAGAGCAATAcgc > 2:160907/1‑251 (MQ=255) cgcTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATACGTCACGGTTGATAGCGCGAATCAATCAGAAAACa > 1:674975/1‑238 (MQ=255) cgcTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATACGTCACGGTTGATAGCGCGAATCAATCAGAAAACa < 2:674975/238‑1 (MQ=255) gcTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATACGTCACGGTTGATAGCGCGAATCAATCAGAAAACAGAGCAATACGCGGt > 2:285017/1‑251 (MQ=255) agctttattACGTTGGCCGGGTGAGCAGGGGCAAATAATGAATTCAGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGTATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATTTGGGCGATTACCTGGTAACTCA‑TGCAGATCGCTATGTTTCTATGAACCTGTCGGCCTCCGATTTTCATTCGTCATGGTGGATAGCTCGaat < 2:74032/212‑1 (MQ=255) aGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATACGTCACGGTTGATAGCGCGaat > 1:74032/1‑219 (MQ=255) gTGAGCAGGGGCAAATACTGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATACCTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTACCCTGTCGGCCTCCGATTTTCATACGTCACGGTTGATAGCGCAAATCAATCAGAAAACAGAGCAATACGCGGTGCGGCCGAAGCCAAATAAATTTGa > 2:523325/1‑250 (MQ=255) gTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATGCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATACGTCACGGTTGATAGCGCGAATCAATCAGAAAACAGAGCAATACGCGGTGCGTCCGCAGCAAATTAAATTTGaa < 2:103554/251‑1 (MQ=255) ggggCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATACGTCACGGTTGATAGCGCGAATCAATCAGAAAACAGAGCAATACGCGGTGCGTCCGCAGCAAATTAAATTTGAAGTGACTg > 1:413888/1‑251 (MQ=255) | AACCCATTTTTATAATCATCTTATTTTTGCGTTGCCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATCCGGCAGAGTTTATTCCGCTGGCAGAAAAGGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTGGCAACACA‑TGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATACGTCACGGTTGATAGCGCGAATCAATCAGAAAACAGAGCAATACGCGGTGCGTCCGCAGCAAATTAAATTTGAAGTGACTG > NC_000913/4276178‑4276656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |