| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,276,212 | C→T | P248S (CCC→TCC) | pdeC → | c‑di‑GMP phosphodiesterase PdeC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,276,212 | 0 | C | T | 93.8% | 87.9 / ‑4.0 | 32 | P248S (CCC→TCC) | pdeC | c‑di‑GMP phosphodiesterase PdeC |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (17/13); total (18/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.61e-01 | |||||||||||
ATTGCAATGGGGTGTGTATGATACGGTGACGAAAACCTTTTTCTCGTTAAGCAAAGAGGCCTCGGCAGCAACGTTTTCTCCGCTGATTCATTTGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGCCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATCCGGCAGAGTTTATTCCGCTGGCAGAAAAGGA > NC_000913/4275983‑4276453 | aTTGCAATGGGGTGTGTATGATACGGTGACGAACACCTTTTTCTCGTTAAGCAAAGAGGCCTCGGCAGCAACGTTTTCTCCGCTGATTCATTTGACGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAAATGCAGCAATTGTTGCGACTTCATATCAACGACTTATCAACCATTTTTATAATAATCTTATTTTTCCGTTTTCCGCCGGTATTTTGGGGAGTc > 2:579720/1‑251 (MQ=255)aTTGCAATGGGGTGTGTATGATACGGTGACGAAAACCTTTTTCTCGTTAAGCAAAGAGGCCTCGGCAGCAACGTTTTCTCCGCTGATTCATTTGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTc < 1:143553/251‑1 (MQ=255) gATACGGTGACGAAAAACTTTTTCTCGTTAAGCAAAGAGGCCTCAGCAGCAACGTTTTCTCCGCTGATTCATTTGAAGGCTTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTATTATCACCCATTTTTATAATAATCTTATTTTTGCGTTTTCCGCCGGTATTTTGGGGAGTCTTGTTTTGCTAttcatctt > 2:72036/1‑245 (MQ=255) cGGTGACGAAAACCTTTTTCTCGTTAAGCAAAGAGTCCTCGGCAGCAACGTTTTCTCCGCTGATTCATTTGAAGGATTTAACCGTACAAAGAAATGGCTATTTTTATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCATCGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTa < 1:57075/251‑1 (MQ=255) ggTGACGAAAACCTTTTTCTCGTTAAGCAAAGAGGCCTCGGCAGCAACTTTTTCTCCGCTTATTCATTTGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCTGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTAc < 2:28604/251‑1 (MQ=255) gACGAAAACCTTTTTCTCGTTAAGCAAAGAGGCCTCGGCAGCAACGTTTTCTCCGCTGATTCATTTGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGt > 1:524572/1‑250 (MQ=255) tctcGTTAAGCAAAGAGGCCTCGGCAGCAACGTTTTCTCCGCTGATTCATTTGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTACAGCCATTGTTGCGAATTCATATCAACGTCTTATAACCCATTTTTATAATCCTCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTAt > 2:583436/1‑251 (MQ=255) tAAGCAAAGAGGCCTCGGCAGCAACGTTTTCTCCGCTGATTCATTTGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTgg > 1:351391/1‑198 (MQ=255) agcaACGTTTTCTCCTTTGATTCATTTGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTGGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAAc < 2:478181/251‑1 (MQ=255) aCGTTTTCTCCGCTGATTCATTTGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACgcgc > 1:571779/1‑251 (MQ=255) ttCTCCGCTGATTCATTTGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTc < 2:108098/250‑1 (MQ=255) ccGCTTATTCATTTGAATGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCACAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTGATCTCCCAAACGTAAATTGCAACGCGCCCTCGaaaa < 2:339718/251‑1 (MQ=255) tCATTTGAAGGATTTCACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTATCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAAc > 1:476738/1‑251 (MQ=255) tGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTAc > 1:138120/1‑183 (MQ=255) tGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTAc < 2:138120/183‑1 (MQ=255) ttAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGCCCGCCGTTATTTTGGGGAGTCTTGTTCTGCTATTACTCTgg > 1:242978/1‑171 (MQ=255) cGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGc > 1:71032/1‑251 (MQ=255) aaGAAATGTCTAGTTATATGCGACAGTTTATTCGACAAAACGCCCTATTGCAGCCATTTTTGCGACTTCATACCAACGTCTTAGAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATGCGACAAAACTATTTATCTCCCAAACGTAAAGTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCaataa < 1:607538/251‑1 (MQ=255) tGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGAAAAAACTATTTATCTCCCAAACGTAATTTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGaa > 2:420888/1‑250 (MQ=255) cgaaaGTTTATCCGACAAAACGCCCAATTGCAGCCATTGTTGCGTCTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATc < 2:169511/235‑1 (MQ=255) cGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATc > 1:169511/1‑239 (MQ=255) tcttCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACTTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGACAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGat > 1:329526/3‑228 (MQ=255) aaaaCCCCCATTTGCAGCAATTGTTGCGACTTAATATCAACGTATTATAACACATTTTTATAATCATCTTATTTTTGCGTTGTCCGCAGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTTGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGACCTCGAAAAACATCAACTTTGTCTTTATTACAAGCCAATAATCGATATCAAACCAGAACAATGTATCGGCGCTgca > 2:216531/1‑248 (MQ=255) cATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTg > 2:203070/1‑251 (MQ=255) tgttgCGACTTCATATCAACGTCTTATAACCCATTTGTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGt < 1:610791/250‑1 (MQ=255) cTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAAttc > 1:520143/1‑249 (MQ=255) ttatatcatctttttATTATCATCGTTTTTTTGCGTTGCCCGCCTGTAGTTTGGGGAGTCTTGTTCCGCTAGTACTCTGGCTACGTATTCGACAAAACTATTTATCTCACAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTGTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGaagta < 2:168042/240‑4 (MQ=255) aaCCCATTTTTATAATCATCTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCag < 1:203070/251‑1 (MQ=255) catcTTATTTTTGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCg > 1:577823/1‑178 (MQ=255) catcTTATTTTGGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGc < 1:583436/251‑1 (MQ=255) ttGCGTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATTCGGCAGAGTTTATTCCGCTGGCAGAAAagga < 1:420888/250‑1 (MQ=255) gTTGTCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAggg > 1:581011/1‑201 (MQ=255) | ATTGCAATGGGGTGTGTATGATACGGTGACGAAAACCTTTTTCTCGTTAAGCAAAGAGGCCTCGGCAGCAACGTTTTCTCCGCTGATTCATTTGAAGGATTTAACCGTACAAAGAAATGGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGCCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATCCGGCAGAGTTTATTCCGCTGGCAGAAAAGGA > NC_000913/4275983‑4276453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |