| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,719,429 | G→A | intergenic (‑385/‑49) | yiaF ← / → yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,719,429 | 0 | G | A | 97.1% | 91.8 / ‑4.1 | 34 | intergenic (‑385/‑49) | yiaF/yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (17/16); total (18/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.06e-01 | |||||||||||
AATTTGTTGTTTCATTGTTAAAAAATGATAGTGCCGTTGCCTTTTTTGTAGCCAGAGATTTACGCCTTCGCAGAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATGAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGACAGGATTAAAAATCGATGATTTCGCCCGGGTTTTGGGCGTATCAGTCGCCATG > NC_000913/3719185‑3719663 | aaTTTGTTGTTTCATTGTTAAAAAATGATAGTGCCGTTGCCTTTTTTGTAGCCAGAGATTTACGCCTTCGCAGAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCtt < 2:235336/250‑1 (MQ=255) gtgctgatgcattttgtGTAGCCAGAGATTTAAGCCAGCGCTGAAGGTTAGATTTTCGAAATCTTTATAAAACATGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTCGGTGGCTATAAGTCACGCTAAATGAAAGGCTGAATCGATTAATAGCCAGAGCATGCCCTGACTTCAACCCGCTTTGTCTGCTTTTCCTGCCTATTCTTAATAAGCTTCTATGCAATTCACGAACCCGCAGTGTGAtgt < 2:273832/240‑3 (MQ=255) tGCCGTTGCCTTTTTTGTAGCCAGAGATTTACGCCTTCGCAGAAGGTTAGATTATCGAAATCTTTACAAGTCAGGAGAGGTAAGAGATCTATCGGCATGTATCAGATCGTTAGTTGGCTATAAGTCACGCTAGATGACAGGCTGAATCGAATCATAGCCAGAGAATGCCCTGACTTACCCCCGCTGCGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGCTGCAATTCACGATCCCGCAGGGTGATTTg > 2:354152/1‑251 (MQ=255) tGCCTTTTTTGTAGCCAGAGATTTACGCCTTCGCAGAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGGAATTCACGATCCCGCAGTGTGATTTGAGGAGt > 1:20504/1‑251 (MQ=255) ccTTTTTTGTAGCCAGAGATTTACGCCTTCGCAGAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACACCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGttt > 2:175688/1‑251 (MQ=255) agaTTTACGCCTTCGCAGAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAg < 1:557176/251‑1 (MQ=255) aGAAGGTTAGAGTTTCGAAATCTCTACAAAACGGGAGTGGTAAGAGGTATATCGGCATTTATCAGATCGTGAGGTGGCTATAAGTCACTCTAAATGACAGGCGGAATCGAATCATAGCCAGAGCATGCCCTGACTGCACCCCGCAGTGTCTGTGTTTCCAGACTATTCTTAATAAGCGTCGATGCAATTCACGATCCCGCAGTGTGATGTGAGGAGTTTTCAATTGAATATAAAGATCCAATGCATGAGCt < 2:212156/251‑1 (MQ=255) gAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTg < 2:234793/251‑1 (MQ=255) aGGTTAGATTTTCGAAATCTTTACACAACAGGAGAGGGAAAAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTATCTGCTTTTCCCGACTATTCTTAATAATCTTCGATGCCATTAACGATCCCGCAGTGTGATTTGTGGAGTTTTCCATGGAATATAAAGATCCAATGCGTGAGCTggt > 2:407858/1‑249 (MQ=255) ttAGATTTTCGAAATCTTTACACAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGCATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTg > 2:407631/1‑249 (MQ=255) tCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTg < 1:407631/250‑1 (MQ=255) cGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATGAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTgg > 1:23797/1‑250 (MQ=255) aaTCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACa < 1:576264/251‑1 (MQ=255) tACAAAACATGATTGGTAAGAGATATATCGGCATTTATCAGCTCGTTAGGTGTCTATAAGTTACGCTAAATGACAGGCTGTATCTAATCATAGACATAGCATGCCCTGACTTCACCCCGCTTGGTCTTCTTTTCCCGACTATTCTTAATAATCTACGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTGCAATGGAATATAAAGATCCAATTCATGATCCGTTTACCAGCCTTGATCAGATTg < 2:439634/250‑1 (MQ=255) ggAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGa < 1:510689/251‑1 (MQ=255) aaGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCAGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCACTTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCaa > 1:94626/1‑182 (MQ=255) gCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCt > 1:404917/1‑251 (MQ=255) tttATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGAc > 1:105222/1‑251 (MQ=255) aTCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGAt > 1:392867/1‑148 (MQ=255) aTCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGAt < 2:392867/148‑1 (MQ=255) tAGGGGGCTATAAGGCACGCTAAATGACAGGCTGAATCGAATCATAGCCCGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGTTCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCCCTGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGCTGAAACGCAGAACATTACCCTGACGCAgagatcaccg > 2:177025/1‑245 (MQ=255) aGGTGGCTATAAGTCACGCTTAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCACTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTTTTTTTAAAGATGAAACGCAGAAAATTACCCTGTCGCACAGAACAACg < 1:299706/250‑1 (MQ=255) aGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATg > 1:481562/1‑132 (MQ=255) aGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATg < 2:481562/132‑1 (MQ=255) catagCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAATCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCt < 2:103260/142‑1 (MQ=255) cAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCt > 1:103260/1‑145 (MQ=255) gCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGCCTATTCTTAATAAGCTTCGGTGCAGTTCACGATCCCGCAGTGTGATTTGATGCGTTTTCAATGGCATATAAAAATCCAATGCGTGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAATATGACACGCAGAACATTACCCTGACTCACAGAACAACGTCCTGTACCGCAATTGGGCGGTTACGACAAGGGACAGGATTAAAAATAgatg > 1:126106/1‑251 (MQ=255) gCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGACAGGATTAAAAATCGATGAttt > 1:459471/1‑251 (MQ=255) cccTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTAc > 1:610828/1‑219 (MQ=255) cccTGACTTCACCCCGCTGTGTCTGCTTTGCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTAc < 2:610828/219‑1 (MQ=255) gACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGACAGGATTAAAAATCGATGATTTCGccc < 1:237733/251‑1 (MQ=255) cTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGACAGGATTAAAAATCGATGATTTCGCCCGGGTTTTGGGCGTATCAGTCg > 1:647688/1‑251 (MQ=255) ttCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCACGTAGTGTGAGTTGAGGATTTTGCAATGTAATATAAAGATCCAATGCATGAGCTGTTGAGCAACATGGAACAGATTGTTTGTAATGATGAAACGCAGAAAAGTACCCTGACGCACATAACAACGTCCTGTACCGAAATGGTGCAGTTACGAAAATGGGCAGGATTAAAAAACGATGATTTCGCCCGGGGTTTGTGCGCATCATTCGcc < 2:435842/250‑1 (MQ=255) cccGACGATTCTTAATAAGCTACGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGATTATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGACAGGATTAAAAATCGATGATTTCGCCCGGGTTTTGGGCGTATCAGTCGCCATg > 2:521321/1‑251 (MQ=255) | AATTTGTTGTTTCATTGTTAAAAAATGATAGTGCCGTTGCCTTTTTTGTAGCCAGAGATTTACGCCTTCGCAGAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATGAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGACAGGATTAAAAATCGATGATTTCGCCCGGGTTTTGGGCGTATCAGTCGCCATG > NC_000913/3719185‑3719663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |