| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,130,210 | G→A | N218N (AAC→AAT) | flgA ← | flagellar basal body P‑ring formation protein FlgA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,130,210 | 0 | G | A | 96.8% | 83.6 / NA | 31 | N218N (AAC→AAT) | flgA | flagellar basal body P‑ring formation protein FlgA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (13/17); minor base T (0/1); total (13/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTGCCGGGTTGCATCAGTTTTGCTTGCGCGTCGCTTAACGTCACACTGGTGCTGGTGGAGGCGGTTGTTTTTGCCGCCCGGCTGTTCGTTACCGGCGCGTCAGTGGTTTCGCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGGTTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTAC‑CCGCCATGCCTGGCGAAACTGGGTTAACTGGATAGGTTGATCGGGTGATAGATCGCGCAGGCTAATGGCATCAAC > NC_000913/1129964‑1130455 | gctgcCGGGTTGCATCAGTTTTGCTTGCGCGTCGCTTACCGTCACACTGGTGCTGGTGGAGGCGGTTGTTTTTGCCGCCCGGCTGTTCGTTACCGGCGCGGCAGTGGTTTCCCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGCGAAGGGCGATCAATACTCATGGTTTATGCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTta < 1:275516/251‑1 (MQ=255) ccGGGTTGCATCAGTTTTGCTTGCGCGTCGCTTAACGTCACACTGGTGCTGGTGGAGGCGGTTGTTTTTTCCCCCCGGCTGTTCGTTACCGGCGCGTCCGAGGTTTCGCGCGGGTGAAACGTGCTTACAGGCTTCAGAGGGGAAGGGCGATCAATACTCATGGGTTATTCCTCATTGTGGGCGCTTTTTTCCTGGGTTGCTTTTTTATCGGCAAGGGACCGGGAATCTTTTACAACTTACAGATTTTTaa > 1:261317/1‑250 (MQ=255) cATCAGTGTTGCTTGCGCGTCGCTTAATGTTACACTGGTGGTGGTGTAGGCGGTTGTTGTTGCCGCCCGGTTTTTCGTTACCGGCGCGTCAGTTGTGTCGCGTGGTTGAACGGTGCGTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATTGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTTCTTTTTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACATATTTTTAAGAATATTc < 2:364860/250‑1 (MQ=255) ccagatttGCTTGCGCGCCGCTTACCGTCACACTGGTGCTGGTGGAGGCGGTTGTTCTTGCCGCCCGGCTGTTCGTTACCGGCGCGTCAGTGGTTTCGTGCGGTTTAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCAGTGATGGCGCGTTTAGCATGTGGTGCTTATTTATCGGCAAGGGTCTGGGAATCTTTAACAGCTTACAGATTTAGAAGAATATTccc < 2:380871/245‑1 (MQ=255) cGCTTAACGTCACACTGGTGCTGGTGGAGGCGGTTGTTTTTTCCGCCCGGCTGTTCGTTACCGGCGCGTCAGGGGGTTCGCGCGGTTGGACGGTGCTTACAAGCTTCAGAGGCGAAATGGGATCAATAATCATGGGTTATTCCTCATTGAGGGGGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGGAAACTTTTACAGCTTACAAATTTATAAGAATATTTCCATCTGCATccaaaaagccc > 1:288646/1‑241 (MQ=255) gttTTTGCCGCCCGGCTGTTCGTTACCGGCGCGTCAGTGGTTTCGCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGCCTACCTGTC‑CCGATACCATGCGCACCCgcgc > 2:437738/1‑251 (MQ=255) tGCCTCCCGGCTGTTCGTTCCCGGCGCGGCAGTGGTTTCGCTCTGTTGAACGGTGCTTACAGGCGTCAGAGTCGAAGTTCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGTGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCTCCCGCGCATTc < 2:121816/250‑1 (MQ=255) gccgccCGGCTGTTCGTTACCGGCGCGTCAGTGGTTTCGCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGTGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCt < 2:653150/250‑1 (MQ=255) gccCGGCTGTTCGTTACCGGCGCGTCAGTGGTTTCGCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGAATTCTGTGc < 2:391536/251‑1 (MQ=255) cccGGCTGTTCGTTACCGGCGCGTCAGTGGTTTCGCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCg < 1:330802/251‑1 (MQ=255) cGTTACCGGCGCGTCAGTGGTTTCGCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATTGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTTCCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCAt < 2:498583/251‑1 (MQ=255) ggCGCGTCAGTGGTTTCGCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAg < 2:154592/251‑1 (MQ=255) gTCAGTGGTTTCGCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTccc > 1:539277/1‑165 (MQ=255) gTCAGTGGTTTCGCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTccc < 2:539277/165‑1 (MQ=255) ggTTTCGCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCtt > 1:152508/1‑251 (MQ=255) cAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGGGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGTACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATCTTCCCATCTGCATCAACAACGCCGCTGACTACCTGTA‑CCGATACAATACGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTACACCCATCACCGATGGCg > 1:679426/1‑250 (MQ=255) gAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATGCCATGCGCACCCGCGCATTCTGTGCGACGGCTGCAGTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACAtt < 1:293823/251‑1 (MQ=255) aaGTGCTATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTGATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCAGCAACAACGCTGCTTACTACCTGTC‑CCGATACCATGCGCACCCTCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGTCCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTg < 1:623635/251‑1 (MQ=255) gTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGAc < 1:418755/251‑1 (MQ=255) aTCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGtt < 1:581064/251‑1 (MQ=255) tACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTccc > 1:605961/1‑251 (MQ=255) gTTTATTCCTTATTGAGGGCGCTTTTATCATGGGTTGATTATTTATCGGCAAGGGACGGGTAAACTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTAc < 2:259650/251‑1 (MQ=255) aTTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCAGCTTTTAC‑CCGCCATGCCt > 1:45268/1‑251 (MQ=255) cccgatctatCGGCAAGGGACGGTTAATCTTTACCAGCTTACAGATTTAAAAGAATATCCCCATCTGCATCAACAACGCCGCTGACTACCTGCC‑CCGATACCATGCGCCCCCGCGCATTCTGGGCGACGGCTGCATTGTTCAGCGCCGGACCTTCTGCGTTGGCGCAAAACCCATCACCGCGGGCGATCACATTGACGCGTTGTCCCGCTTTTAC‑CCGCCATGCCTGGCGAAACTGGGTTAACTGGATAg < 1:558716/243‑1 (MQ=255) tatgggccaggatcgggttaacTTTAACAGCTTATAGACTTAGTAGAATATTGCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGGTCCCATACGCACACGCGCCTGCTGTGCGACGGCTGAATTGGTCAGCGCCTGACATTCTGCGTTGGAGATAACCCCAACACGGCTGACGACCACATCTACACGTTGTCCCGCTTT‑ACGCCGCCAAGCCTGGCGAAGATGGGGTACCAGGATAGGTTGATCg > 2:61520/22‑251 (MQ=255) ttcggcaggggagcgttAATCTTTAACAGCTTAAAGATTAATAAAAATATCCCAACCTGCATCAACAACGCCGCTGTCTCCCT‑TCACCGATCCCAGGCGCCCCCGCGCATTCTGGGCGACGGCTGCATTTTTCAGCGCCTGATTTTCTGCGTGGGCGCTAAACCCACCCCCGCGGGCGATCACTTGGACGCTTTGCCCCTCTTTTCC‑CCGCCATGCCTGGCGAAACTGGGTTAACTGGATAGGTTGATCg < 1:643767/234‑1 (MQ=255) atCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTAC‑CCGCCATGCCTGGCGAAACTGGGTTAACTGGATAgagatcggc > 2:558716/1‑242 (MQ=255) aGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTAC‑CCGCCATGCCTGGCGAAACTGGGTTAACTGGATAGGTTGATCGGGTGAt > 1:166667/1‑249 (MQ=255) tCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCAGCTGACTACCTGTC‑CCGATACCATGCGCACCAGCGCATTCTGTGCGACGGCTGCATTGTTCAGAGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTAC‑CCGCCATGCCTGGCGAAAATGGGTTAACTGGATAGGTTGACCGGGTGATAGATCGCGCAGGCt > 1:353672/1‑251 (MQ=255) tACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTAC‑CCGCCATGCCTGGCGAAACTGGGTTAACTGGATAGGTTGATCGGGTGATAGATCGCGCAGGCTAATGGCATcaac > 1:551133/1‑251 (MQ=255) aaCAGTTTTAAAAGAATACTCCCATCTGCATCAACAACGCCGGTGATTCCCTGTC‑CCGATCCCATGCGCACCCGCCCTTTCTGTGCGCCGCTTGCTTTGTTCCGCGTCTGCCCTTCTGCGTTGGCGCAAACCCCATCCCCGCTGGCGATCACATTGACGCGTTGTCCCGTTTTTCC‑CCGCCATGCCTGGCGAAACTGGGTTAACTGGATAGGTTGATCGGGTGATAGATCGCGCAGGCTAATGGCATcaac < 1:32711/250‑1 (MQ=255) | GCTGCCGGGTTGCATCAGTTTTGCTTGCGCGTCGCTTAACGTCACACTGGTGCTGGTGGAGGCGGTTGTTTTTGCCGCCCGGCTGTTCGTTACCGGCGCGTCAGTGGTTTCGCGCGGTTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGGTTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTC‑CCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTAC‑CCGCCATGCCTGGCGAAACTGGGTTAACTGGATAGGTTGATCGGGTGATAGATCGCGCAGGCTAATGGCATCAAC > NC_000913/1129964‑1130455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |