| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 677,829 | T→C | W139R (TGG→CGG) | djlB → | J domain‑containing protein DjlB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 677,829 | 0 | T | C | 80.8% | 39.6 / 6.0 | 26 | W139R (TGG→CGG) | djlB | J domain‑containing protein DjlB |
| Reads supporting (aligned to +/- strand): ref base T (2/3); new base C (0/21); total (2/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.08e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.15e-02 | |||||||||||
GCTAAATCTGTTTGGCAACCAGAAGAATATGAGGTAGCAGAACATGAAATTCTGCTCGCCTTTCGTGCGTTACTTGCCTCTGATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGTGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGA > NC_000913/677583‑678074 | gCTAAATCTGTTTGGCAACCAGAAGAATATGAGGTAGCAGAACATGAAATTCTGCTCGCCTTTCGTGCGTTACTTGCCTCTGATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCggcggt < 1:596068/250‑1 (MQ=255)gCTAAATCTGTTTGGCAACCAGAAGAATATGAGGTAGCAGAACATGAAATTCTGATCGCCTTTCGTGCGTTACTTGCCTCTGATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCggcggtg > 1:322457/1‑250 (MQ=255) aaTCTGTTTGGCAACCAGAAGAATATGAGGTAGCAGAACATGAAATTCTGCTCGCCTTTCGTGCGTTACTTACCTCTGATAGTGAAAGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTCTTAGCAGAAAGATTGCggcggtaat > 1:611050/1‑246 (MQ=255) cggcattcagtagaaTATGAGGTTGCAGATCATGAAATTCTGCTCGCCTTTCGGGCGTTACTTTCCTCTGATAGTTAACGTTTTCTGCCCTCGGCCTGGCATCGATTCATTCAGTAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTAGCGGTGCGTAATCGACATGAACACTGCTCATTTATCCTACGAGTGCGAGGTGTTATTATCAGAAAGATTACGGCGGTTTCAGGAGGaaaa < 2:238218/240‑1 (MQ=255) ccAGAAGAATATGAGGTAGCAGAACATGAAATTCTGCTCGCCTTTCGTGCGTTACTTGCCTCTGATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCggcggtagcatggggggaaaaat > 1:371924/1‑232 (MQ=255) gaagaaTATGAGGTAGCAGAACATGAAATTCTGCTCGCCTTTCGTTCGTTACTTGCCTCTGATAGTGAACTTTTTCTGCCCTTCGCCTGGCAGCTATTCATTCAGCAACTAAAGTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCATAAAGATTGCGGCGGTTACAGGAGGAACATACCGGGGa < 2:382695/251‑1 (MQ=255) gaagaaTATGAGGTAGCAGAACATGAAATTCTGCTCGCCTTTCGTGCGTTACTTGCCTCTGATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGa < 1:568426/251‑1 (MQ=255) agaaTATGAGGAAGCAGAACATGAAATTCTGCTCGCCTTTCGTGCGTTACTTGCCTCTGATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCggcggtataagggaggaaataaaggggga > 1:366913/1‑227 (MQ=255) aGAACATGAAATTCTGCTCGCCTTTCGTGCGTTACTTGCCTCTGATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAAc < 1:356815/251‑1 (MQ=255) gCTCGCCTTTCGTGCGTTACTTGCCTCTGATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTtat < 1:181213/251‑1 (MQ=255) cGCCTTTCTTGCGTTACTTTCCTTTGATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATGCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTACCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATATACGAAGAAGAACTGGAATCCTTTTTATATg < 2:616894/251‑1 (MQ=255) gcctctgagaagtaaCGTTTTCTGCCTGCCGTCTGGCAGCGATTCATTCAGCTATTAAATTATTGTGCGATGGAGGAGATTGATGAATTACGCTGGTCTCTGTTCTCAATCGCCATGAACATTGACCATTTATCCTTCGAGTGCGTTGTGTTATTAGTAGAAAGATTGCGGCGGGTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAAGCCTTTTTATATTCCATTGCGAAGGGGAATg < 2:414351/237‑1 (MQ=255) gATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGttttt < 1:202152/249‑1 (MQ=255) gATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTa < 1:673736/250‑1 (MQ=255) ccTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGGGCACAAACGCCATGAACACTGCCCATTTATCCCTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGTAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGATCATTCTGCATCTGccc < 2:655982/251‑1 (MQ=255) gtacgagATTCATTCAGCAATTAAATTATTGCCCGATGTAGGAGAGTTATGAATGACGCTGGTAGCTGTGAACAATTGGCATGAACACTGCCCAGTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATAGACGAATAAGAACTGGAATCCTTTTTATATGGCATTGCGAAGGGGATTTTTTTTAAGTTCTAGTCCAGTCTTCATCTGCCCg < 2:611050/243‑1 (MQ=255) aaattaTTGCTCGATGGAGGAGATTGATGAATTTCGCGGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGTGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCg < 2:190360/251‑1 (MQ=255) aaagtattGCGCGATGGAGGAGATTGATGAATTTCGCTGGCCGCTGTGCACAATCGCCATTAACACTGCCCATTTATCCGTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATc < 1:25698/246‑1 (MQ=255) gCTCTATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTAc < 1:648175/251‑1 (MQ=255) cGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCaa < 1:380614/251‑1 (MQ=255) gCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCg < 2:182937/251‑1 (MQ=255) acaATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCt < 1:614953/251‑1 (MQ=255) aTCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGTGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAAc > 1:275856/1‑150 (MQ=255) aTCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGTGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAAc < 2:275856/150‑1 (MQ=255) cATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTTGAATCCTTTTTATATGCCATTGCGAAGGGGaa < 1:423834/135‑1 (MQ=255) acacTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGTGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTACCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTAttt > 1:339591/1‑250 (MQ=255) gCCCATTTATCCTTCGAGGTCGGGGTGTTATTAGCAGAAAGATTGCGGCGGTTACAGTAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAgcgc < 2:583306/250‑1 (MQ=255) aTCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGCGGTGACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAAGCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTTCCAAATGTTCTCTCGGATTTGTTCAGCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATcgc < 2:566460/250‑1 (MQ=255) aGTGCGTGGGGTGAATAGCAGAAAGATTGCGGCGGTTTCAGGAGAAAAATACCTGGGAAATAGCCTAAGAAGAACTGGAATCCTGTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTTCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGGATCCACAATGGCGGACAGTGTATTTAGCGCAACATCTCGCAGTGAtt < 2:585181/251‑1 (MQ=255) aGTGCGGGGGGTTATTAGCAGAAAGATTGCGGCGGTTACAGGAGGAAAATACCGGGGAAAGAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTATAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCATCATCGCGCTGTGAtt < 2:85547/251‑1 (MQ=255) aTTGCGGTGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTACCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGcaca < 2:339591/251‑1 (MQ=255) ggcggcgGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTGTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTATCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGa < 2:660229/250‑1 (MQ=255) | GCTAAATCTGTTTGGCAACCAGAAGAATATGAGGTAGCAGAACATGAAATTCTGCTCGCCTTTCGTGCGTTACTTGCCTCTGATAGTGAACGTTTTCTGCCCTCCGCCTGGCAGCGATTCATTCAGCAATTAAATTATTGCTCGATGGAGGAGATTGATGAATTACGCTGGTCGCTGTGCACAATCGCCATGAACACTGCCCATTTATCCTTCGAGTGCGTGGTGTTATTAGCAGAAAGATTGCGGTGGTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGA > NC_000913/677583‑678074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |