Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 46,277 T→C C157C (TGT→TGC)  yaaU → putative transporter YaaU

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091346,2770TC96.9% 189.1 / ‑2.5 66C157C (TGT→TGC) yaaUputative transporter YaaU
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (28/35);  total (30/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.45e-01

TCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATTGCCGCGATGTGGTATGTCGGCGCGACCTGTGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATCAAAC‑TGTTTGGCGAACCGGTGGCTTTCGATGAAGAGCAGCCGCAGCAAACCCGTTTTCGCGATCTGTTTAA  >  NC_000913/46035‑46519
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                   
tcctaTAAAGTCGGAAGGCGCAAAAGGGTGCTCATTGATATCATCGACAGCGGCGTGATAACGGTGGCGACGATGGTTGTGTCATCCCCCGCCGAACTGTTGGTGATGCGTGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCATTGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTGATCGCCGCCAGGTGGTATGTCGGCGCGACCTGCGCCGATc                                                                                                                                                                                                                                              <  2:120487/246‑1 (MQ=255)
 cctgtcaaGTCGGACGGCGCAAAATGTTCCTCATTTATATCATCGCCATCGGGGTGATATCGGTGGCGACGATTTTTGTTTCATCCCCCGTCTAACTTTTGGTGATGCGGGTACGTATCGGCTTTGTCATCGGTGCAGATTATGCCATCGCCACCTCAATGATCAC‑CTAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTAGGGCGGCGCGACCTGCGACGATCt                                                                                                                                                                                                                                             <  2:588030/244‑1 (MQ=255)
      aaaGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGGGGCGGCGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTctg                                                                                                                                                                                                                                       >  1:408958/1‑249 (MQ=255)
        aGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCt                                                                                                                                                                                                                                     <  1:568699/251‑1 (MQ=255)
              aCGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCGTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGcc                                                                                                                                                                                                                                                  <  1:606994/232‑1 (MQ=255)
              aCGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGAGGAGACGAAGTTTGTTTCATACCCCGTCGAACTGGTGGTGATGCGGGTACTTATCGGCATTGTCCTCGGTGCAGATTATACCATCGCCCCCTCACTGAT‑ACACGCGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATACGCTTTATCGCCGCCCTGTGGGTTGGCGGCGCGACCTGCGcccgatcggaaaggcgtcg                                                                                                                                                                                                                                 >  2:606994/1‑232 (MQ=255)
                                 attgattacagcGCCATCGGCGTGATATCGGGGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGGTGGTGATGCGGGTACTTATCGGCATTGTCAGCGGTGCAGATTATCCCAGCGCCTCCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGTTTTATCGCCGCCATGTGGTATGTCGGCGCGACCGGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAggcg                                                                                                                                                                                                             <  2:607070/239‑1 (MQ=255)
                                     atatCAACGCCAACGGGGTGATTGTGGTGGGGACGGTGGTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGGTCTTATCGGCATTGGCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTATTGGCTTTATGATGTGGAAGGCGGCTg                                                                                                                                                                                                         <  1:539730/250‑1 (MQ=255)
                                                      gTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGt                                                                                                                                                                                         >  1:341508/1‑249 (MQ=255)
                                                        gATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAgcg                                                                                                                                                                                     >  1:622451/1‑251 (MQ=255)
                                                         atatCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAgcgc                                                                                                                                                                                    >  1:266733/1‑251 (MQ=255)
                                                               gTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGACACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGAt                                                                                                                                                                              >  1:604232/1‑251 (MQ=255)
                                                                gggCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCGGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATc                                                                                                                                                                             <  2:478774/250‑1 (MQ=255)
                                                                      gtaTGTGTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTCCTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCCCCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCtgt                                                                                                                                                                       <  2:63072/249‑1 (MQ=255)
                                                                          gtttgtttCATCCCCCGTCGAACTGTCGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCtgtttgt                                                                                                                                                                   <  2:266733/251‑1 (MQ=255)
                                                                            ttgtttCATCCCCCTTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCtgtttgtt                                                                                                                                                                  <  1:658930/250‑1 (MQ=255)
                                                                              gtttCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCCATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGGCGGCTACTGGCTTTATGATGTGGACGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGttgat                                                                                                                                                               >  2:50130/1‑251 (MQ=255)
                                                                                   aTCCCCCGTCGAACTGTTGGGGATGCGGGTACTTATCGGCATTTTCCTCGGTGCAGATTAGCCCATCGCCACCACAATGATCCC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCTGCTTTATCGCCGTCATGTTGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGttgattttga                                                                                                                                                          <  1:509438/251‑1 (MQ=255)
                                                                                         cGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATACCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTgggc                                                                                                                                                    >  1:237485/1‑249 (MQ=255)
                                                                                             gAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGAtt                                                                                                                                                >  1:181573/1‑251 (MQ=255)
                                                                                              aaCTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTc                                                                                                                                               <  1:109080/251‑1 (MQ=255)
                                                                                               aCTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCg                                                                                                                                              >  1:328457/1‑251 (MQ=255)
                                                                                               aCTGTTGGTGATGCGGGTACTTATCGGCATTGACATAGGTGCAGATTATCCCATCGCCACCTCAATGCTCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGAGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTCATGGCTTTATGATGTGGATGGCGGCTGGCGCTGGATACTGGGTAGCGCGGCGATCCCATGGTTGCTGATTTTGATTGGTCGAGTCg                                                                                                                                              >  2:329949/1‑251 (MQ=255)
                                                                                                    tGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACt                                                                                                                                          <  1:428597/250‑1 (MQ=255)
                                                                                                               gTACTTTTCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTcc                                                                                                                              <  1:162936/251‑1 (MQ=255)
                                                                                                                tACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTATCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATTGCCGCGATGTGGTATGTCGGCGCGACCTGTGCCGGTCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGGAGCGCTGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGCATCTccc                                                                                                                             >  2:128324/1‑251 (MQ=255)
                                                                                                                 aCTTAGCGGCATTGTCATCGGTGCAGATTATCCCAGCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTcccc                                                                                                                            <  1:242186/251‑1 (MQ=255)
                                                                                                                    tATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCt                                                                                                                         >  1:79230/1‑251 (MQ=255)
                                                                                                                     aTCGTCATTGTCATCGGTGCAGATGATCCCATCGCCACCTCAATGAGCAC‑CGAGTGCGCCAGGTCCCGTCAGCTGGCGTTGTCCATCAGCTTTACCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATTATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGGTCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTg                                                                                                                        <  2:237485/251‑1 (MQ=255)
                                                                                                                      tCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAA‑CGAGTTCTCCAGTACCCGTCCGAGGGCGTTTTACATCAGCATTATCGCCGCCATGTGGTATGTCGGCGCGAACAGCGCCGAGCTGGTCGGCTAATGGCTTTATGATGTGGAAGGCGGCAGGAGCTTGATGCGGGGTAGCGCGGGGTTGCCCTGTGTGTTGTTTTTGATTGGTAGATTCGACATGACTGAATATCCCAGCTgg                                                                                                                       >  2:224068/1‑251 (MQ=255)
                                                                                                                           aTTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGttatt                                                                                                                  >  1:198851/1‑251 (MQ=255)
                                                                                                                                cATCGGTGCAGATTATCCCAGCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTTGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCa                                                                                                             <  1:388127/251‑1 (MQ=255)
                                                                                                                                 aTCGGGGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACGGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCaa                                                                                                            <  2:98193/251‑1 (MQ=255)
                                                                                                                                   cGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCaaa                                                                                                           <  2:181573/250‑1 (MQ=255)
                                                                                                                                   cGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAg                                                                                                          <  1:178434/251‑1 (MQ=255)
                                                                                                                                    ggTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCGCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAgg                                                                                                         <  2:341508/251‑1 (MQ=255)
                                                                                                                                       gCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCg                                                                                                      >  1:12692/1‑251 (MQ=255)
                                                                                                                                        cAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGaa                                                                                                                                   <  1:413222/221‑1 (MQ=255)
                                                                                                                                        cAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGAGCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTgga                                                                                                                                   >  2:413222/1‑219 (MQ=255)
                                                                                                                                         aGATTATCCCGTCGCCAACTCAATGATCAC‑AGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTTTCGCCGCACTGTGGTATGTCGGCGCGACCTGAGCCGCTCTGGTCGGCTACTGGCTTTATGCTGTGGAAGGCGGCTGGCGCTGGATGCTGGGGAGCGCGGCGTTCCCCTGTTTGTTGATTTTTATTGGTCGGTTCGCACTGCCTGACTCTCACCTCTGGTTCTTACGCCAAggcgg                                                                                                      >  2:616268/1‑246 (MQ=255)
                                                                                                                                         aGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTTTTACGCAAAGGGCg                                                                                                      >  2:630090/1‑249 (MQ=255)
                                                                                                                                          gATTATCCCATCTCCACCTCCATGTCCAC‑CGTGTTCTCCAGTTCCCGTCAGCGGGCTTTTTCCATCAGCTTTATCTCCGCCATGTGTTATGTCTTCGCGACCTGCTCCGATCTGGTCTGCTACTTGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGTTAGCGCTGCTATCCCCTGTTTTTTGATTTTGATTGTTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGt                                                                                                   <  1:289010/251‑1 (MQ=255)
                                                                                                                                          gATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGGATGTCGGCGCGACCTGCGCCGATCTGGTCGGCAACTGGCTTTATGATGTGGCAGGCGGCTGGCGCTGGAGGCGGGGTGGCGCGGCGATCCGCTGTTTGTTGATTTTGATTGGTCGATTCGCACTTCATGAACCCCCCCCCTGGttattagccacagggcgggg                                                                                                   >  2:142829/1‑237 (MQ=255)
                                                                                                                                             tATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTaa                                                                                                 <  1:178085/250‑1 (MQ=255)
                                                                                                                                                      gCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTCCTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTCGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGACCTGCCTGAATCTCCCCTCTGGTTATTACGCAAAGGGCGAGTAAAAGAGAGCgg                                                                                       >  2:178797/1‑250 (MQ=255)
                                                                                                                                                         aCCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTTGGACTGCCTGAATCCCCCCGCTGGTTATTACACAAAGGGCGGGTAAAATAGTGCGacgg                                                                                    >  2:4070/1‑248 (MQ=255)
                                                                                                                                                          ccTCAATGATCAC‑CGAGTTCTCCAGGACCCGGCAGCGGGCGTGTGCCATCAGCATTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGGAGCGCGTCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCGGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAagag                                                                                   <  1:289695/251‑1 (MQ=255)
                                                                                                                                                          ccTCAAGGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAagag                                                                                   <  1:259034/251‑1 (MQ=255)
                                                                                                                                                            tCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAag                                                                                     >  1:583514/1‑247 (MQ=255)
                                                                                                                                                             cAATGATCAC‑CGATTTATCCAGTACCCGTCAGCGGGCGTTTTCCATCATCTTTATTGCCGCGATGTGGTATGTCGGCGCGACCTGTGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCTGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAgat                                                                                 <  1:128324/250‑1 (MQ=255)
                                                                                                                                                               aTGAACAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAAGCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAgatgat                                                                              <  2:583514/251‑1 (MQ=255)
                                                                                                                                                                                      cccGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATAAAAC‑TGTTTGGCGAACCg                                                       <  2:12692/251‑1 (MQ=255)
                                                                                                                                                                                      cccGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGAGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGACATGATGATAAAAC‑TGTTTGGAGAACCg                                                       >  2:469152/1‑251 (MQ=255)
                                                                                                                                                                                               gggCGTTTTCCATCTGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGTTCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGATATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGAT‑AAACATGTTTGGCGAACAGGAGGCtttg                                              >  2:542839/1‑250 (MQ=255)
                                                                                                                                                                                                    ttttCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTCGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAACGAGGGCGAAGAGATGATGATAAAAC‑TGTTTGGCGAACGGGTGGCTTTCgttg                                          >  2:218096/1‑247 (MQ=255)
                                                                                                                                                                                                          aTCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATAAAAC‑TGTTTGGCGAACCGGTGGCTTTCGATGAAGagc                                    >  1:357437/1‑250 (MQ=255)
                                                                                                                                                                                                             aGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCACTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGAGTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATAAAAC‑TGTTTGGCGAACCGGTGGCTTTCGATGAAGAGCAGcc                                <  1:652487/251‑1 (MQ=255)
                                                                                                                                                                                                                              gtgGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATAAAAC‑TGTTTGGCGAACCGGTGGCTTTCGATGAAGAGCAGCCGCAGCAAACCCGtttt                <  1:461956/250‑1 (MQ=255)
                                                                                                                                                                                                                                ggTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATAAAAC‑TGTTTGGCGAACCGGTGGCTTTCGATGAAGAGCAGCCGCAGCAAACCCGTTTTcg              <  1:504944/250‑1 (MQ=255)
                                                                                                                                                                                                                                     gTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGttatta                                                                                                                 >  1:95967/1‑147 (MQ=255)
                                                                                                                                                                                                                                     gTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGttatta                                                                                                                 <  2:95967/147‑1 (MQ=255)
                                                                                                                                                                                                                                      gcGGCGCGGCCTGCGCCGATCTTGTCGGTTACTGGCTTTAGGATTGGGAAGGCGGCTGGCGATGGAGGCTGGGTATCGTGGCGATCCCCTGTTTGTTGATTTGGATTGGTCGATTCGAACTGCCTGAATCGCCCCGCTGGTTATTACGAATAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATAAAAC‑TGTGTGGCGATCCTGTGGCTTTTGATGAAGAGCAGCCGCAGCAAACCCGTTTTCGCGATCTg       <  2:408958/250‑1 (MQ=255)
                                                                                                                                                                                                                                        ggCGCGACCTGCGCCGATCTGGTCGGCTACTGGTTGTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATGCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGTGTGCGAAGAGATGATGATAAAAC‑TGTTTGGCGAACCGGTGGCTTTCGATGAAGAGCAGCCGCAGCAAACCCGTTTTCGCGATCTGtt     <  1:284279/251‑1 (MQ=255)
                                                                                                                                                                                                                                            cgACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATAAAAC‑TGTTTGGCGAACCGGTGGCTTTCGATGAAGAGCAGCCGCAGCAAACCCGTTTTCGCGATCTGTTTaa  >  2:602993/1‑250 (MQ=255)
                                                                                                                                                                                                                                             gtccTGCGCCGATCGGGGTGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTTGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGTCTGAATCTCCCCGCTAGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAgatgatgataaa                                                                        <  2:543005/178‑4 (MQ=255)
                                                                                                                                                                                                                                             gACCTGCGCCGATCTGGTCGGCTACTGGCTTTCTGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAgatgatgataaa                                                                        >  1:543005/1‑177 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                   
TCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAC‑CGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATTGCCGCGATGTGGTATGTCGGCGCGACCTGTGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATCAAAC‑TGTTTGGCGAACCGGTGGCTTTCGATGAAGAGCAGCCGCAGCAAACCCGTTTTCGCGATCTGTTTAA  >  NC_000913/46035‑46519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑