| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 16,749 | T→A | intergenic (+192/+2) | insL1 → / ← hokC | IS186/IS421 family transposase/protein HokC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 16,749 | 0 | T | A | 93.5% | 80.5 / ‑2.8 | 31 | intergenic (+192/+2) | insL1/hokC | IS186/IS421 family transposase/protein HokC |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base A (24/5); total (26/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
CCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGAGGCCTCGGGTTGATGGTAAA > NC_000913/16507‑16986 | ccATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGGGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCg > 1:350237/1‑251 (MQ=255)ccATCGCTGGATTTCCCCCCCAGAAATGCTGGATCCGAAAAGAAGAACTAACACGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCg > 1:129454/1‑251 (MQ=255) aTTTCCCCCACAGAAGTGCCGGATCAGAAAAGAAGACCTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGGGCTTAAAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGACACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCAGCCGTTGCAATTACTCGGATTCGTa > 2:461602/1‑249 (MQ=14) aaGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGc > 1:155957/1‑251 (MQ=255) gAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTgg > 1:271745/1‑251 (MQ=255) gAAAAGAAGAACTAACTCGTTATGGAGAATAACTAAAATGGGCATCTGGAGCTTAAAGATGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAAAGCGAGACATCGTCTTAACGAGGCACCAAGGCGGCGCATTCTTCAGATGGTTCATCCCTTAAGTACGCGCGTATGGGACCACTCCCCGCCGTTGCACTTACTCGGAGTCGGACGTCGTGAAAAAATCAACCtacttctgt > 2:221427/1‑243 (MQ=14) aaaGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAGACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTAGTAAGCCGTGAAACCAGCAACCTCCGTCTGGcc > 1:639046/1‑251 (MQ=255) agaagaACTAACTCGTTGTGGAAAATAACAAAAATGGTCTGCGGGAGCTTACAGGGGGCCTTTCGTGGGACATTCTCCCTGACAGCCTAAAAAACGCAATTGAAGAACGCGAGGCATCGTTTTAACGAGGCCCCGAGGCGTCGCTTTCTTCAGATGGTTCACCCCTTAATTGAGCGTTTATGGAATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAg < 1:168513/251‑1 (MQ=18) agacctaactCGTTGTGGAAACTAAAAAAACTGGTCATCTGGCGCTAACAGGTGCCTTTTCGTGGGACATTACCCCAGACAGCCTAAAAACCGCAATCGAAGACCGCGCGTCATTTTCTTAAGGAGGCCCCGAGGCCGCGCTTTCTTCAGATGTTTCACCCCTTATGTTACCGTTTATGGGATCCCTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGtgc < 1:125377/247‑3 (MQ=255) aaaactaactGGTGGTGTAAAATAACAAAATTGGTCATCGGGAGCTTAAAGGTGGCCTTTGGTGGAACAGGTCCCCTGAAAGCCTACAAAACGAAATTGAAGAACGCGAGGAATCGTTTTAACGGGGCACCGAGGCGCCGCTTTCTTAGGATGTTTCACCCCTTAAGTTAGCGCTTAGGGGACCCCCCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTc < 1:414977/249‑1 (MQ=255) aactaactCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCgg > 1:550978/1‑251 (MQ=255) aactCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGAtgt > 1:278458/1‑251 (MQ=255) aactCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGAtgt > 1:443643/1‑251 (MQ=255) actCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGAtgtg > 1:224750/1‑251 (MQ=255) cTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCCAAGAGGACTTTTCTCGTTACCAgc > 2:662592/1‑251 (MQ=255) aTTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGaaaa > 1:119970/1‑170 (MQ=255) aTTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTAAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTAGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTAcggcggagt > 1:178809/1‑248 (MQ=255) gTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATAc > 2:180545/1‑250 (MQ=255) gTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGAGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGCCCAGTTCGGAtgt > 2:469666/1‑196 (MQ=255) tATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGAttacaatgacca > 1:564907/1‑239 (MQ=255) tGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGtt > 1:434876/1‑174 (MQ=255) gACAGCCTACAAAACGCAATTGAAGAACGAGAGGCATCGTCTTAACGCGGCACAGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCAAAGAGGTCTATTCTCGTTACAACCGCCGCCACTCAGGAGGTGATagagtacgcaatacaggcg > 2:547729/1‑233 (MQ=21) ttGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGGTCAGGGCGACAatca > 1:622768/1‑239 (MQ=255) aTCGTCTTAACGAGGCACCGAGGCGCCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATTCAGATTACGATACGGGCGACAATCATCGCCTTTTGCTGCCTCATTGCTCtctt > 1:199181/1‑251 (MQ=38) cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGTCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTc > 1:437937/1‑251 (MQ=255) gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCCGGGCGGCAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCCTGACCTTACGGTc > 1:333371/1‑250 (MQ=255) tCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGGCAATCATCGCCTTATTCTGCTTCATTGCTCTCTTCTCCTTTACCTTGCGGTCGGTGAGAGGCCctccgatcggg > 1:449706/1‑240 (MQ=255) agttggcgattagggaaatcccccccGCCGTTGCACTTACCCGAATTCGAAAGCCGTGAAAACAGCAACCCCCGCCGGGCCAGTGCGGATGTGAACCCCACAGAGGTCTTTTCTCTTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATagg < 1:411565/229‑1 (MQ=255) cTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAatcatc > 1:86274/1‑164 (MQ=255) aTCACTCCCCGACGTTGCACTTACTCGGCTTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGCGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGAGAAACAGATAGTGATCCAGGCGGCACCCGTCGCCTTTTGCTGCTTTATTTCTCTATTCCCCATGACCCTCAGGTCAGGAGAAGGCACTCTACCAGTGTTCAGCatatctggggcatcggggtgatg > 2:352979/1‑232 (MQ=255) cccccGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCCCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTaaa < 1:180545/250‑1 (MQ=255) | CCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGAGGCCTCGGGTTGATGGTAAA > NC_000913/16507‑16986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |