| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,498,182 | Δ1,336 bp | IS2‑mediated | insC6–insD6 | insC6, insD6 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4498182–4499512 | 4499517 | 6–1336 | 22 [3] | [0] 18 | insC6–insD6 | insC6,insD6 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4498181 | 3 (0.050) | 18 (0.310) | 16/470 | 1.9 | 92.5% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 4499518 = | 0 (0.000) | intergenic (+18/‑1742) | insD6/yjgZ | IS2 insertion element protein InsB/uncharacterized protein YjgZ | |||||
GAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATACCGGTCATCCACTGAAAAATACCTGCGAAA > NC_000913/4499269‑4499761 | aacagtaatcatcccgggcaaatgcccgggaattattctaggattattttctttgttaaaaaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggcgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGc > 2:555094‑M2/250‑251 (MQ=255) aatcatcccgggcaaatgcccgggaattattctaggattattttctttgttaaaaaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattagcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGatat < 1:324440‑M2/8‑1 (MQ=255) ggcaaatgcccgggaattattctaggattattttctttgttaaaaaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGat > 1:447277‑M2/234‑251 (MQ=255) ttctttgttaaaaacgatcaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattaattatatacattcagtaaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagtgatttgatggtcccttgtGCTTATATGAATAAGGATATTTTATATAGAATACTTTTCAGTACATGCg > 2:84000‑M2/202‑250 (MQ=255) aaaaacggtattaactgatggatttactatttaccgctccctgcaggggggattagcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggagttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGc < 2:84792‑M2/66‑1 (MQ=255) tattaaatgaggtatttaatatataccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcatacaaaatcctgtactcaaagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATCTTTTATACAGAATACTTTTCAGTACAAGCGACTATATTACAGTCTGACATCTATg > 2:442996‑M2/178‑251 (MQ=255) tatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGAt > 1:614765‑M2/166‑251 (MQ=255) atttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGAt < 1:86078‑M2/86‑1 (MQ=255) tgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTg > 1:308549‑M2/145‑249 (MQ=255) gaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGcc < 1:541248‑M2/124‑1 (MQ=255) cgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGtat < 1:74652‑M2/129‑1 (MQ=255) tttcattatttatatacattccataaaaaagtaacctcataaaaaatcctgtactcacatggtgatgcgggataactgacgtaagaagtgctgcagggatttgagggtcccgtgtGCTGATATGAATACGGATATTTTATACAGAAAACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGCTCAGGAAGATTAAGTGACTGTGGTTTAAAACTGTCTGCCGATATattcatc > 2:620800‑M2/116‑248 (MQ=255) cctgtattcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCgg < 2:447277‑M2/183‑1 (MQ=255) tgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGCAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTACGTCTGTCAgcggct > 2:139860‑M2/67‑249 (MQ=255) gtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATggcgtgt > 2:156643‑M2/55‑248 (MQ=255) cgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATAc < 1:199307‑M2/215‑1 (MQ=255) tgtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGAATGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTTGCTGAGGTTTCAAACTGTCTGCAGGTATATTCCTCTCTCCCTTAAAAACCATCACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATAATTTAAGTACAAATAACGGTCAt > 2:529470‑M2/30‑251 (MQ=255) cccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAAGGGCGGTATATTTTCAGTACAAATACCGGTCATCCACTGAAAAATACCTGCGaaa < 1:571182‑M2/244‑1 (MQ=255) | GAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATACCGGTCATCCACTGAAAAATACCTGCGAAA > NC_000913/4499269‑4499761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |