New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3652036 =	NA (NA)	3 (0.050)	3/482	4.7	8.8%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	4348862 =	31 (0.510)					intergenic (‑118/+453)	dcuB/dcuR	anaerobic C4‑dicarboxylate transporter DcuB/DNA‑binding transcriptional activator DcuR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGACGAAGACCAGAATGACCAGACCGATACCGCCTAATAAACCCAGCGCGATACCACCCTTTCTGGCACCATAAAACAGACATATCAGTATTATGATAAGTTGGATAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTAATGTTTTGTTTGCTGTTATCTTATTGATATTTATCGGTCTATTTTTTGTTCTCAGGGCAGATGTCATTAGGTTTATAGATTAATCTGATCTACCCATTTGTGGGTAAAAATACACATAATGC  >  NC_000913/4348626‑4349112                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                            acgacgaagacCAGAATGACCAGACCGATACAGCCTAATAAACCCAGCGCGATACCACCCTTTCTGGCACCATAAAACAGACATATCAGTATTATGATAAGTTGAATAGTAAATAACATGTGTGAACACTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTc                                                                                                                                                                                                                                                >  2:514139/3‑250 (MQ=255)             aGAATGACCAGACCGATACCGCCTAATAAACCCAGCGCGATACCACCCTTTCTGGCACCATAAAACAGACATATCAGTATTATGATAAGTTGGATAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTg                                                                                                                                                                                                                                   >  2:513680/1‑251 (MQ=255)                        aCCGATACCGCCTAATAAACCCAGCGCGATACCACCCTTTCTGGCACCATAAAACAGACATATCAGTATTATGATAAGTTGGATAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTac                                                                                                                                                                                                                          >  1:176689/1‑248 (MQ=255)                              aCCGCCTAATAAACCCAGCGCGATACCACCCTTTCTGGCACCATAAAACAGACATATCAGTATTATGATAAGTTGGATAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATAACTCACAGTGAATATTGGCTGATTAAAGCAGCgg                                                                                                                                                                                                                  >  2:558790/1‑251 (MQ=255)                                 gCCTAATAAACACAGAGCGTTAACACCGTTGCTGTCACCATAAAACAGACCAATCAGTATTATGATCAGTTGGATAGTTCATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGCATAGATCACAGCCACGTTCTGTTATGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGGTTGGTCGTTACCGGCATTCACAAATACATCCCAGTGACTATTGGCTGATTCAAGCAGCGGCa                                                                                                                                                                                                                >  2:88877/1‑250 (MQ=255)                                   cTAATAAACCCAGCGCGATACCACCCTTTCTGGCACCATAAAACAGACATATCAGTATTATGATAAGTTGGATAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAAt                                                                                                                                                                                                             >  1:160549/1‑251 (MQ=255)                                            ccagctggagaccaccCTTTCTGGCACCATAAAACAGACAAATCAGTAGTATGATAAGTTTGATAGTAAAGAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTTAATAGATCACAGGCACGTTCTGTTTTGTATGAACTGGTTTCAGAGCCTGACTAAATATCCGTTTTGTCTTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCagt                                                                                                                                                                                                    <  2:126810/241‑3 (MQ=255)                                                                    cACCATAAAACAGACATATCAGTATTATGATAAGTTGGATAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCagagag                                                                                                                                                                           <  1:643976/251‑1 (MQ=255)                                                                       cATAAAACAGACATATCAGTATTATGATAAGTTGGATAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCACATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGaa                                                                                                                                                                         >  2:400022/1‑250 (MQ=255)                                                                          aaaaCAGACATATCAGTATTATGATAAGTTGGATAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGa                                                                                                                                                                      <  1:558296/250‑1 (MQ=255)                                                                                gACATATCAGTATTATTATAAGTTGGATAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATTCCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTg                                                                                                                                                               <  2:372648/251‑1 (MQ=255)                                                                                   atatCAGTATTATGATAAGTGGGATAGTAAATAACAGGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGGTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCg                                                                                                                                                            <  1:242/251‑1 (MQ=255)                                                                                       cAGTATTATGATAAGTTGGATAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATgg                                                                                                                                                        >  1:358820/1‑251 (MQ=255)                                                                                                          aTAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTgcg                                                                                                                                     <  1:513680/251‑1 (MQ=255)                                                                                                                    aCATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTa                                                                                                                            >  2:335567/1‑250 (MQ=255)                                                                                                                        gtgtgAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGTCTTTAGCAAATACCTCACAGTGAATATTTGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCATAGAGAAAGACTCTCTGGCGATGGTTTTATAGTTTGTACTGCGCAGATGTTAAtgtt                                                                                                                       <  1:405964/251‑1 (MQ=255)                                                                                                                              aCCCTCGCGATAATCCTTTTTAAATTTTTGCTGAAGAGATCACAGTCTCGTTCTGTTTTGTATGAACTGTTTTCAGAGTCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGTTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGTCTTTTTCAGAGAGAAAGACTCTCTGGAGATGGTTTTATAGGTTGTACTGCGCAGATGTTAAtgttttgttt                                                                                                                 <  2:185229/251‑1 (MQ=255)                                                                                                                              aCCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTAAtgttttgttt                                                                                                                 <  1:147716/251‑1 (MQ=255)                                                                                                                                   cgcgATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATa                                                                                                                                                                                                                                                    >  2:156564/1‑116 (MQ=255)                                                                                                                                   cgcgATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATa                                                                                                                                                                                                                                                    <  1:156564/116‑1 (MQ=255)                                                                                                                                          aTCCTCTTTAAATTTTAGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGAATCAATATCAGTTTGGTCGTTACCGGCTTGAGCAAATACCTCAAAGTGAATCTTGGCTGATTAAATCAGCGGCAAATTTCTGCACTGT‑ACAACGCGGCTTTTTCAGAGAGACAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCCAATGTTAATGTTTTGTTTGCTTTTATCttt                                                                                                     >  2:425378/1‑250 (MQ=255)                                                                                                                                                 ttAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCAGTTTGGTAGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGCTAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTAATGTTTTGTTTGCTGTTATCTTATTGttat                                                                                              >  1:459592/1‑251 (MQ=255)                                                                                                                                                         ttGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTAATGTTTTGTTTGCTGTTATCTTATTGATATTTATCGGt                                                                                      >  1:351228/1‑251 (MQ=255)                                                                                                                                                           gCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCCCTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTTCGCAGATGTTAATGTTTTGTTTGCTGTTATCTTATTGATATTTATCGGTCt                                                                                    >  2:394450/1‑251 (MQ=255)                                                                                                                                                                       acaGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGt                                                                                                                              <  2:321623/197‑1 (MQ=255)                                                                                                                                                                       acaGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGt                                                                                                                              >  1:321623/1‑197 (MQ=255)                                                                                                                                                                         aGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTAATGTTTTGTTTGCTGTTATCTTATTGATATTTATCGGTCTATTTTTTGTtctc                                                                       >  1:554706/1‑250 (MQ=255)                                                                                                                                                                                    gTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTAATGTTTTGTTGGCTGTTATCTTATTGATAGTTATCGGTCTATTTTTTGTTCTCAGGGCAGATg                                                             <  2:64346/249‑1 (MQ=255)                                                                                                                                                                                                                         ccGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTAATGTTTTGTTTGCTGTTATCTTATTGATATTTATCGGTCTATTTTTTGTTCTCAGGGCAGATGTCATTAGGTTTATAGATTAATCTGATCTACCCATTtgtg                      <  2:176689/251‑1 (MQ=255)                                                                                                                                                                                                                          cGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATCTTGGCTGATTAACGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTAATGTTTTGTTTGCTGTTATCTTATTGATATTTATCGTTCTATTTTTTGtt                                                                          >  2:64118/1‑198 (MQ=255)                                                                                                                                                                                                                          cGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAAGTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTAATGTTTTGTTTGCTGTTATCTTATTGATATTTATCGGTCTATTTTTTGtt                                                                          <  1:64118/198‑1 (MQ=255)                                                                                                                                                                                                                                             ttAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTAATGTTTTGTTTGCTGTTATCTTATTGATATTTATCGGTCTATTTTTTGTTCTCAGGGCAGATGTCATTAGGTTTATAGATTAATCTGATCTACCCATTTGTGGGTAAAAATACACATAATGc  >  1:252475/1‑251 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                            AAGACGAAGACCAGAATGACCAGACCGATACCGCCTAATAAACCCAGCGCGATACCACCCTTTCTGGCACCATAAAACAGACATATCAGTATTATGATAAGTTGGATAGTAAATAACATGTGTGAACCCTCGCGATAATCCTATTTAAATTTTTGCTGAATAGATCACAGTCACGTTCTGTTTTGTATGAACTGTTTTCAGAGCCTGACTAAATATCCGTTTGGTCGTTACCGGCTTTAGCAAATACCTCACAGTGAATATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATAA‑GCGGCTTTTTCAGAGAGAAAGACTCTCTGGCGATGGGTTTATAGTTTGTACTGCGCAGATGTTAATGTTTTGTTTGCTGTTATCTTATTGATATTTATCGGTCTATTTTTTGTTCTCAGGGCAGATGTCATTAGGTTTATAGATTAATCTGATCTACCCATTTGTGGGTAAAAATACACATAATGC  >  NC_000913/4348626‑4349112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.