New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1978503 =	NA (NA)	4 (0.070)	4/482	4.3	10.3%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 4434636	35 (0.580)					coding (1930/1944 nt)	cpdB	2',3'‑cyclic‑nucleotide 2'‑phosphodiesterase/3'‑nucleotidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCGCTGGGCGAGCAGGTGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTTCTCATCCGGTGAAGCAAA  >  NC_000913/4434391‑4434885                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                          gccgcTGGGCGAGCAGGTGAGGGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGGGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGTTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCt                                                                                                                                                                                                                                                      <  1:132029/251‑1 (MQ=255)   cgcTGTGCGAGCAGGCGCGCGAAACGGCTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGCTGGCGGGGCGGGATGAACGTGCGGCATAACCGCCGGAGGCGCTGAGCTTATCTGGGCTACGGGGCCTGGCTCGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCAAATAAATGCCGGGTGCGGTTGATGATTTATAAGCCGCAAAAGAAGTGTTTTACTTACCCAAATcccactg                                                                                                                                                                                                                                                     >  2:573501/1‑245 (MQ=255)               aGGTGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAAc                                                                                                                                                                                                                                        >  1:661542/1‑251 (MQ=255)                    ggCGAAAAGGTTGTTGCACTGGCGGATTGGATGGAGTTGAATTTGCCCGGGGTGTTGGCGGGGCGGGATGAACGTGCGGCATAACTGCCGAGTGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAATATGCGCCAGCAGCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGat                                                                                                                                                                                                                                   <  1:620536/250‑1 (MQ=255)                                        gggggACTGGATTGAGTTGAATTTGCCCGGGGTGTTGGCGGTGCGGGAGGATCGTGGGACATAACTGCCGGTTGCGCTGAGTTTAACTGGCCTACGTTGCATGGCTTGAAGGGGGGAAAAGATGGGCAAGCATCGAATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTAt                                                                                                                                                                                                               <  1:408613/248‑1 (MQ=255)                                            gacgggATGGAGTTGAATTTGCCCGGGGTGTTGGGGGGGCGGGATGAACGTGCGGAATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGTTTGTAGGGCGGATAAGATGCGCCAGATTCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCAt                                                                                                                                                                                                           <  1:269611/247‑1 (MQ=255)                                             aCTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCACTAAATGCCGGATGCGGATGGTGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGCATTTAttaatt                                                                                                                                                                                                          >  2:644890/1‑247 (MQ=255)                                                     gAGTTGAATTTTCCCGTGTGGTTGGCGGTGCGGTAAGAACTTGCGGAATACCTGCGGGATGCTGTGGTCTTTCCTGGTCTTCGTTGCCTGGCTTGTAGGGCGTAAAAGATGCGCCAGCACCGCTTCCGCCAATAAATGCCGTATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTg                                                                                                                                                                                                  <  1:17003/251‑1 (MQ=255)                                                                               ggTGCGGGATGAACGTGCGGCATACCTGCCGGATGCGCTGAGTTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCgg                                                                                                                                                                        <  1:131209/251‑1 (MQ=255)                                                                                               gCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGTTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGgag                                                                                                                                                         <  1:519509/250‑1 (MQ=255)                                                                                                       aCTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGccc                                                                                                                                                                                               >  1:599656/1‑204 (MQ=255)                                                                                                            cGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGGGTTTTACTTACTCAAATCCACCTGATGAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAACCgg                                                                                                                                           >  1:3989/1‑251 (MQ=255)                                                                                                                   gcTGAGCTTATTTGTCCTACGGTGCATGGTTTGAAGGGCGAATAAGAGGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCa                                                                                                                                    <  1:73935/251‑1 (MQ=255)                                                                                                                     tGAGCTTATCTGGTCAACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGAATCTCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAg                                                                                                                                   <  1:54258/250‑1 (MQ=255)                                                                                                                            aTCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTAt                                                                                                                           >  1:476367/1‑251 (MQ=255)                                                                                                                                   cTACGGTGCATGGCTTGTAGGGAGGATAAGATGAGCCAGCATCGCATCCGCCAATAAATGCCGGCTGCGGATGATGATTTATAGGCCGCAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATCTCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTACTAAACGCTGCGGCTTTATCTGACGGCGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGc                                                                                                                    >  2:639972/1‑251 (MQ=255)                                                                                                                                         ggcatgtcttggagggggaaaaaGATGCGCTAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCgg                                                                                                              <  2:295947/230‑1 (MQ=255)                                                                                                                                           cATGGCTTTTAGGGCGGAAAAGATGCGCCAGCACCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTg                                                                                                            <  1:172869/251‑1 (MQ=255)                                                                                                                                           cATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTg                                                                                                            >  1:189880/1‑251 (MQ=255)                                                                                                                                                                gATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTg                                                                                       <  1:620489/251‑1 (MQ=255)                                                                                                                                                                        aGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGGAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCggg                                                                               >  1:369594/1‑251 (MQ=255)                                                                                                                                                                                          aaaTGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAgttg                                                                                              >  1:390920/1‑218 (MQ=255)                                                                                                                                                                                          aaaTGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAgttg                                                                                              <  2:390920/218‑1 (MQ=255)                                                                                                                                                                                                     gCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCATTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACtcatc                                                  <  1:398948/251‑1 (MQ=255)                                                                                                                                                                                                      cGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACtcatca                                                 <  1:123888/251‑1 (MQ=255)                                                                                                                                                                                                           gatgatTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTAATTCATCGGATACTGCCCTTTCTCtt                                                                                                                                                                                       >  1:443787/1‑112 (MQ=255)                                                                                                                                                                                                           gatgatTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTAATTCATCGGATACTGCCCTTTCTCtt                                                                                                                                                                                       <  2:443787/112‑1 (MQ=255)                                                                                                                                                                                                                              aagaagTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCgcg                         >  2:322248/1‑249 (MQ=255)                                                                                                                                                                                                                                     gtTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTATTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTtct                  >  1:568152/1‑251 (MQ=255)                                                                                                                                                                                                                                       tttACTTACTCAAATCCACCTGATACATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGCGCGGTtctc                 >  2:288711/1‑250 (MQ=255)                                                                                                                                                                                                                                              actCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGCGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTTCTCATCCGGTg         >  1:558846/1‑251 (MQ=255)                                                                                                                                                                                                                                                 cAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTTCTCATCCGGTGAAg      <  1:151253/251‑1 (MQ=255)                                                                                                                                                                                                                                                   aaTCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTTCTCATCCGGTGAAGc     >  1:581195/1‑250 (MQ=255)                                                                                                                                                                                                                                                    aTCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTTCTCATCCGGTGAAGCaa   <  1:282431/251‑1 (MQ=255)                                                                                                                                                                                                                                                      ccACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTTCTCATCCGGTGAAGCaaa  >  1:474520/1‑250 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                          GCCGCTGGGCGAGCAGGTGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGACTCATCAGCAATCCACGCTGCCAGCACCGAGCGGTTCTCATCCGGTGAAGCAAA  >  NC_000913/4434391‑4434885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.