Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	2,320,770	IS2 (+) +5 bp	coding (728‑732/1827 nt)	atoS →	sensor histidine kinase AtoS

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2068941 =	NA (NA)	37 (0.620)	31/480	0.8	97.3%	noncoding (1331/1331 nt)	IS2	repeat region
	?	NC_000913	2320770 =	1 (0.020)					coding (728/1827 nt)	atoS	sensor histidine kinase AtoS
*	?	NC_000913	= 2070271	NA (NA)	49 (0.810)	45/482	0.3	98.0%	noncoding (1/1331 nt)	IS2	repeat region
	?	NC_000913	= 2320774	1 (0.020)					coding (732/1827 nt)	atoS	sensor histidine kinase AtoS

ATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCGGACTCCCTATATCACTTAAATTGATACAACTTTTTAGAGTA  >  NC_000913/2070024‑2070521                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                           aTTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACAGCAATCATCTGTGCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTg                                                                                                                                                                                                                                                         <  1:610965/251‑1 (MQ=11)                gaAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTccc                                                                                                                                                                                                                                          <  1:29067/251‑1 (MQ=37)                gaAATAACGGGTTTGCTGGTACACCATGTTGCCGGGCAACTAGTGAGTCCGTCATCCTCGTGTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTTGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACCTCAATCATCTGTTCTCCAATGACTAGGCTTAAATCGAGTATTAAGACTATCACTTATTTAAGTGATATTTGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTTGTGAAGCATCCTccc                                                                                                                                                                                                                                          <  2:524679/251‑1 (MQ=11)                     aaCTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTTGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGtt                                                                                                                                                                                                                                     <  2:591996/251‑1 (MQ=39)                                     cacCATGTTGCCGGGCAACGAGGGAGTCCGTCATACCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTATCTCCGGACCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGATGTCTGGAGATTCAGGGGGCCATCCTAGTGGCGAAGCCTCCTCCCGTGTTTTAATACTCATTGATg                                                                                                                                                                                                                     >  2:70072/1‑251 (MQ=14)                                         aTGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAACCTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATtc                                                                                                                                                                                                                              >  2:440128/1‑238 (MQ=255)                                         aTGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATtc                                                                                                                                                                                                                              <  1:440128/238‑1 (MQ=255)                                              gCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCaggagg                                                                                                                                                                                                            >  1:31646/1‑251 (MQ=255)                                                    cagtgtgggtggccGTAATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTGCGCCGTCTGCGTTTCTCCGGCCCTAAGACTACAATCATCTGTTCTCTAATGACTAGTCTAAAAACTAGTGTGAAGACTATCACTTATTTAAGTGATAATGGTTGTCTGTGGAGTCGGGGGGCCAGTCTAGTGGCGATGCATCCTTCCGTGTGGTAGTTCTCATTTATGGTCAGGTGGTAACtt                                                                                                                                                                                                      <  2:88872/239‑1 (MQ=14)                                                    cAACGAGGGAGCCCCGCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTGCTGTGTTGTACGCCGTCTGCGTTTCTCCGGCCCTAAGAAAACAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACtt                                                                                                                                                                                                      <  2:247147/251‑1 (MQ=17)                                                                ccggcATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGGCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAg                                                                                                                                                                                                 <  2:567703/240‑1 (MQ=255)                                                                ccGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAg                                                                                                                                                                                                 >  1:567703/1‑244 (MQ=255)                                                                  gTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTACAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCAAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGGGGTAACTTATCCGCGCGCCgg                                                                                                                                                                                         >  2:612113/1‑250 (MQ=255)                                                                            gTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATg                                                                                                                                                                              <  1:407813/251‑1 (MQ=255)                                                                               cAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGgtg                                                                                                                                                                           >  1:675857/1‑251 (MQ=255)                                                                                                                  gtgGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCgg                                                                                                                                        >  1:330229/1‑250 (MQ=255)                                                                                                                    ggTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCgtg                                                                                                                                       <  1:142395/250‑1 (MQ=255)                                                                                                                       aCGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGCTGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGAGTTgg                                                                                                                                   >  2:541876/1‑250 (MQ=255)                                                                                                                          ccGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGt                                                                                                                                >  1:249452/1‑251 (MQ=255)                                                                                                                             tCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGTCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGATGTAAc                                                                                                                                                                                                        <  2:128552/176‑1 (MQ=255)                                                                                                                             tCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAAc                                                                                                                                                                                                        >  1:128552/1‑176 (MQ=255)                                                                                                                             tCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGTTACTTCTGGTGTGGGACTGTTGATAGATGAGTCTGGCCTGGAGCGGGTTGTGGTAgg                                                                                                                             >  2:262382/1‑250 (MQ=21)                                                                                                                                                                gTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATATATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAg                                                                                           <  2:340665/250‑1 (MQ=255)                                                                                                                                                                  tctcCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGc                                                                                         <  1:578694/250‑1 (MQ=255)                                                                                                                                                                       aaTGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGGCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGGGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGGTGAGGTAGTGAAAGGTCCATATTCCGTACTGGACGGTTCACAGGCAAtttg                                                                                   >  2:189689/1‑249 (MQ=255)                                                                                                                                                                           aCTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGt                                                                               <  1:164037/251‑1 (MQ=255)                                                                                                                                                                              aGTCTAAAACATAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGAATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTCTAAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGCTAGTTGAGTCTGCGCTGGAGCGATTTGAGGTAGTGAAAGGTACCTATTCCGTACTGTATGTTTCCCCGGCCATTGGCGGTAtt                                                                            >  2:426476/1‑251 (MQ=37)                                                                                                                                                                              aGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTa                                                                              <  1:143408/249‑1 (MQ=255)                                                                                                                                                                              aGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTAt                                                                             <  1:109786/250‑1 (MQ=255)                                                                                                                                                                              aGTCAAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGTGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTa                                                                              <  1:42425/249‑1 (MQ=255)                                                                                                                                                                                   aaaaaCTAGTATTAAGACTAGCACTTAGTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTTCGGTTCACAGGCAATTGGCGGTATTGtt                                                                         <  1:350068/249‑1 (MQ=255)                                                                                                                                                                                           gTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGCGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTGACTtcatc                                                                >  2:245381/1‑250 (MQ=255)                                                                                                                                                                                                  gACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCaaaa                                                         >  1:136705/1‑250 (MQ=255)                                                                                                                                                                                                                tAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCGTTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAGTTGGCGGTATTGTTAACTTCATCACCCATAAGGGTGAAACTCCgg                                          >  2:93573/1‑251 (MQ=255)                                                                                                                                                                                                                tAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTATAGTGGCGAAGCATACTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCCGCGCGCCGGCGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGGGTTGAGGTAGTGAAAGGTCCATATTCCGTAATGTACGGTTCACAGGAAATTGGCGGAATTGTTTACGTCCTCCCCCAAAAGGGGGAATCTCCgg                                          >  2:457984/1‑251 (MQ=255)                                                                                                                                                                                                                tAAGAGATATTGGTTGTCTGGAGATTCAGGGGACCAGTCTAGTGGCGAAACATCAACCCGTGTTTTAATTCTCATTGATGGTAAGGAGGTAACTTATAAGCGCGCCGGAGCTAATTATGGTGTGGGACTGTTGATAGATAAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATGCCGTACTGTACGGTTCACAGGCAATTGACGGTAATGTTAAATTCATCACCAAAAAGGGTGAATCTCCgg                                          >  1:403411/1‑251 (MQ=255)                                                                                                                                                                                                                 aagggATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCgg                                          <  2:675857/246‑1 (MQ=255)                                                                                                                                                                                                                      atatTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCGGACTccc                                    >  1:68453/1‑251 (MQ=255)                                                                                                                                                                                                                          tGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCGGACTCCCtat                                 <  1:93573/250‑1 (MQ=255)                                                                                                                                                                                                                          tGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGGAACTTATCAGCGCGCCGGAGATAAGTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAAGTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCGGACTCCCtat                                 <  1:426476/250‑1 (MQ=255)                                                                                                                                                                                                                           ggTTGTTTGGAGTGTCCGGGGGCCAGTCTTGTGGCGAATCATCCTCCCGTGTTGTAATTCTTATTGATGGTCAGGAGGTAACTTATCAGCTCGCCGGAGATAATTATGGTGTGGGACTGGTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTGCATCACCAAAAAGGGTGAATCTCCGGACTCCCtata                                <  2:451257/250‑1 (MQ=255)                                                                                                                                                                                                                           ggTTGGCTGGAGATTCCGGGGGCCAGTCTGGTGTCGAAGCACTCTCCCGTGTTTTAATTCTTATTGATGGTTAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTTGTGATAGATGATTCTGGTCTGGTGCGTTTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGGTCTCAGGCAATGGGCGGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCGGACGCCCtata                                <  2:451278/250‑1 (MQ=255)                                                                                                                                                                                                                              tGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCGGACTCCCTATATCa                             <  1:541876/250‑1 (MQ=255)                                                                                                                                                                                                                                   ggAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCGGACTCCCTATATCACTTaaa                       <  1:31039/251‑1 (MQ=255)                                                                                                                                                                                                                                         tCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAAGTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCTCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCTGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCGGACTCCCTATATCACTTAAATTGAt                  <  2:238535/250‑1 (MQ=255)                                                                                                                                                                                                                                          cAGGGGGCCAGTCGAGTGGCGAATCATACTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTAGGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCTCCAAAAAGGGTGAATCTCCGGACTCCCTATATCACTTAAATTGATAc                <  2:154233/251‑1 (MQ=255)                                                                                                                                                                                                                                                   aGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCGGACTCCCTATATCACTTAAATTGATACAAcgtt          <  2:293968/248‑4 (MQ=255)                                                                                                                                                                                                                                                   aGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCGGACTCCCTATATCACTTAAATTGATACAACttt          >  1:293968/1‑248 (MQ=255)                                                                                                                                                                                                                                                        aGTGGCGAAGCATCTTCCCGTGTTATAATTCTCATTGATGGTCAGGAGGTAAATTAGCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGTTAGTGTTAACCTCATCACCAAAAAGGTTGAATCGCCGGACTCCCTATATTACTTAAATGGATACAACTTTTTAGagta  <  2:417250/251‑1 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                           ATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTGAATCTCCGGACTCCCTATATCACTTAAATTGATACAACTTTTTAGAGTA  >  NC_000913/2070024‑2070521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.