New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1584241	32 (0.530)	3 (0.050)	3/478	4.7	5.0%	coding (2246/2280 nt)	ydeP	putative oxidoreductase YdeP
	?	NC_000913	3730285 =	82 (1.370)					coding (481/1323 nt)	xylA	xylose isomerase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATGCGGCGTGAGCTGCGCTTACCGTCTGGCGTAAGCGCAATAAGATTAACTCTTTCGCCGTTTTTTACACGGCAAATTTTAGCTTGTTTAGCACTCATAAAGACCACATCTCGTTGACC  >  NC_000913/1584000‑1584482                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                  aaTCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGACAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAg                                                                                                                                                                                                                                          <  2:96877/251‑1 (MQ=255)       tattcTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCTGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATTCTTTTATAGCCAGGAATg                                                                                                                                                                                                                                     <  2:113660/246‑1 (MQ=255)        aTGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGcc                                                                                                                                                                                                                                   >  1:92228/1‑251 (MQ=255)                     cAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCg                                                                                                                                                                                                                      >  1:616568/1‑251 (MQ=255)                       ggCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATCGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAAAGGCATTAATTTGATGGTTCTAATTCAAC‑AGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTg                                                                                                                                                                                                                    >  2:650976/1‑251 (MQ=255)                       ggCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTg                                                                                                                                                                                                                    <  1:251705/251‑1 (MQ=255)                                 aaGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGGAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGGGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATGCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAgt                                                                                                                                                                                                          <  1:321279/251‑1 (MQ=255)                                                       tCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTg                                                                                                                                                                                    >  1:279248/1‑251 (MQ=255)                                                                           ttACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTg                                                                                                                                                                  >  1:167361/1‑249 (MQ=255)                                                                                  tGTAAGCAGAAGTTTATATCTTATAGACTGTAGTTTAATTTAATCCCTGTGAGCAACTTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGTAGAGGCATTAATTTGCTGGTTCTAATTCCAA‑CGGAATACTTTTATAGACAGGAATGCCACTTCATGGATCGTGGTTATCAAGTGTTAGCCTGAGATTCGATTCTGGAAAATAGGTCACCAGTGAGCgttc                                                                                                                                                           >  1:216839/1‑246 (MQ=255)                                                                                    tAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGGAATAATAGTCCATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAATTGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGcc                                                                                                                                                       >  2:253158/1‑251 (MQ=255)                                                                                     aGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGcc                                                                                                                                                       >  1:345308/1‑250 (MQ=255)                                                                                           aaGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGt                                                                                                                                                <  1:214841/251‑1 (MQ=255)                                                                                                       tataGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAACATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACtt                                                                                                                                    >  1:465006/1‑251 (MQ=255)                                                                                                        ataGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACttt                                                                                                                                   >  1:436746/1‑251 (MQ=255)                                                                                                                  gTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGAAAGCAGAAGAAATGCGAAGAGGCATTAATTTGCTGGTTCTAATTGAAC‑CGGAATCATTTTATAACCCGGAATGCCACTTAATGGATc                                                                                                                                                                                                                       >  1:636955/1‑157 (MQ=255)                                                                                                                   tttaatttaaTCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTCTcc                                                                                                                         >  2:257199/1‑250 (MQ=255)                                                                                                                    ttaatttaatCCATGTGAGCAAATTGCGAAAAAATAGCCAATGAAGAATTATTCTGCTGTGCGGATAACAGCAGAAGAAATGAGAAGAGGCATTAATATGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTAGATTCTGAAAAATAGGTAACCAGTCAGCGGTAAGCCATAGGGCAAATGACCACTTTTAATCTATCCAt                                                                                                                       >  2:623205/1‑251 (MQ=255)                                                                                                                         ttaatCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATgcggc                                                                                                                  >  1:193422/1‑251 (MQ=255)                                                                                                                              ccATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATGCGGCGTg                                                                                                               >  2:188643/1‑249 (MQ=255)                                                                                                                                aTGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATGCGGCGTGAGCt                                                                                                           >  2:297617/1‑251 (MQ=255)                                                                                                                                                   taataGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATACAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATGCGGCGTGAGCTGCGCTTACCGTCTGGCGt                                                                                         >  2:603699/1‑250 (MQ=255)                                                                                                                                                                 gAATTCTTCTGCTGTGCGAATGACAGCAGCAGCAACGTCAAGCGGCCTTCTTTTGCTGGTTCTAATT‑ATCTCGAACTACTTTTATAGCCAGGAATGCCACTTAATAGATCGTGGTTATCAAGTGTTAGCCTGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCTGTCCGCCATAGGGTACATGACCACTTTTAGTCTATCCATGCGGCGTGAGCTGCTGTTACCGTCTAGCGTAAGCTCATTAAGagt                                                                          >  2:279936/1‑249 (MQ=255)                                                                                                                                                                    ttcttcTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAg                                                                                                                                                         <  1:70846/169‑1 (MQ=255)                                                                                                                                                                    ttcttcTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAg                                                                                                                                                         >  2:70846/1‑169 (MQ=255)                                                                                                                                                                           gctgTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATGCGGCGTGAGCTGCGCTTACCGTCTGGCGTAAGCGCAATAAGATTAACTCtt                                                                   <  1:194906/248‑1 (MQ=255)                                                                                                                                                                            ctgTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATGCGGCGTGAGCTGCGCTTACCGTCTGGCGTAAGCGCAATAAGATTAACTCTTTCGc                                                               >  1:259819/1‑251 (MQ=255)                                                                                                                                                                                gCGGATTACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATGCGGCGTGAGCTGCGCTTACCGTCTGGCGTAAGCGCAATAAGATTAACTCTTTCGCCGt                                                            <  2:345308/250‑1 (MQ=255)                                                                                                                                                                                 cGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGGTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGATATCAAGTGTTAGCATGTGATTCGATTCTGGCAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATGCGGCGTGAGCTGCGCTTACCGTCTGGCGTAAGCGCAATAAGATTAACTCTTTCGCCGttt                                                          >  1:656573/1‑251 (MQ=255)                                                                                                                                                                                              aagaaATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGAAAATGACCACTTTTAATCTATCCATGCGGCGTGAGCTGCGCTTACCGTCTGGCGTAAGCGCAATAAGATTAACTCTTTCGCCGTTTTTTACACGGCaa                                              >  1:582073/1‑250 (MQ=255)                                                                                                                                                                                                                        aTGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATGCGGCGTGAGCTGCGCTTACCGTCTGGCGTAAGCGCAATAAGATTAACTCTTTCGCCGTTTTTTACACGGCAAATTTTAGCTTGTTTAGCACTCATaa                     >  1:517283/1‑249 (MQ=255)                                                                                                                                                                                                                                          ggAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATGCGGCGTGAGCTGCGCTTACCGTCTGGCGTAAGCGCAATAAGATTAACTCTTTCGCCGTTTTTTACACGGCAAATTTTAGCTTGTTTAGCACTCATAAAGACCACATCTCGTTGAcc  >  1:629370/1‑251 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                  AATCAGTATGCTTAATATAACAGGCTGGAGAAAAGAGGAAATAGGACTGGTGCTTCAGTACTGAGCGGAGTTTCTTACAGCTGTAGGCAGAAGTTTATATCTTATAGTATGTAGTTTAATTTAATCCATGTGAGCAAATTGCGAAATAATAGTCAATGAGGAATTCTTCTGCTGTGCGGATGACAGCAGAAGAAATGAGAAGAGGCATTAATTTGATGGTTCTAATTCAAC‑CGGAATACTTTTATAGCCAGGAATGCCACTTAATGGATCGTGGTTATCAAGTGTTAGCATGTGATTCGATTCTGGAAAATAGGTCACCAGTGAGCGGTCAGCCATAGGGTAAATGACCACTTTTAATCTATCCATGCGGCGTGAGCTGCGCTTACCGTCTGGCGTAAGCGCAATAAGATTAACTCTTTCGCCGTTTTTTACACGGCAAATTTTAGCTTGTTTAGCACTCATAAAGACCACATCTCGTTGACC  >  NC_000913/1584000‑1584482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.