New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	1 (0.020)	26 (0.440)	25/474	1.1	98.1%	intergenic (+253/‑69)	ychE/insH21	MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

CAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTA  >  NC_000913/1299253‑1299714                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                         cAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATGACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCAGGTTATTTTCGCCACATCATAATCCTGGTCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataat                                                                                                                                                                                                                     <  1:627689‑M1/251‑6 (MQ=255)    aggAAACGGAGCTGCCATGCTTCGTTTACATCGTACTTATTGTTACTTTGTTTCCGCGCATTTATTAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTCCAGTTAGGTATAAAGATTTCCTTAACTGCTGCTCCTCATCATCATTTTATTTTCGCCACAACATAATCCTGGGCGTTCTGAAGAATAAGTGAAATGATATTATTAATGCCACTGCCTTTGGTAGAGGCAAGTGTTaagtaataat                                                                                                                                                                                                                  <  2:521986/249‑8 (MQ=255)              gttgcCATGTTCCGTTTACTTCGGCATTATTTTTAATTTGTTCCCTCGCATTTATCAAAAGAAAAAGGAATAGGTAAAAATATCCTTCTCAAATAACAGTTAGTTATAAGGATTTCCTTAACTTCTTCACCTCACCAACATGTTATTTTCGCCACATCATAATCCTGGGCGTGCTGAATAATAATTGTAATGATATTATTAATTCCACTGCCTTTGGTAGATGAAAGTGCTAAataataatcaattgttaa                                                                                                                                                                                                        <  2:680790‑M1/249‑19 (MQ=255)                   cATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattat                                                                                                                                                                                                   >  2:254320‑M1/1‑228 (MQ=255)                      gCTCCGTTTACTTCGACATTATTTTTAATTTGTTCCCGAGAAGTGATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAAGTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatttttaaattattgt                                                                                                                                                                                                <  2:187657‑M1/251‑27 (MQ=255)                                                     gTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaa                                                                                                                                                                  <  1:665431‑M1/250‑57 (MQ=255)                                                                gTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCGTAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCAGGTTATTTTCGCAACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaatatagacatgc                                                                                                                                                      <  2:419954‑M1/251‑69 (MQ=255)                                                                   aTCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtcaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctt                                                                                                                                                    <  2:357871‑M1/250‑71 (MQ=255)                                                                    tCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTCTTAATTCCACTGCCTTGGGTAGAGGAAAGTGCTCAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctt                                                                                                                                                    >  2:516816‑M1/1‑179 (MQ=255)                                                                                              tatTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaa                                                                                                                         >  1:322984‑M1/1‑153 (MQ=255)                                                                                                       cAAATTACAGTTAGTTTTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttt                                                                                                                 <  2:245698‑M1/249‑106 (MQ=255)                                                                                                         aaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgtta                                                                                                             <  1:567172‑M1/251‑110 (MQ=255)                                                                                                             aCAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggc                                                                                                         <  1:516816‑M1/251‑114 (MQ=255)                                                                                                                                            ttgcctccacatcatgttatttacGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAAGAAAGTGATAAataataatcaattgttaaattattgttcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggt                                                                           <  2:262066‑M1/241‑144 (MQ=255)                                                                                                                                             ctcctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtc                                                                          >  1:212426‑M1/1‑106 (MQ=255)                                                                                                                                                      atcatGTTATTTTCGCCACCTCATCATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgcattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaag                                                                  >  2:328875‑M1/1‑97 (MQ=255)                                                                                                                                                           gTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtatgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagtatt                                                            <  2:529946‑M1/250‑159 (MQ=255)                                                                                                                                                                   cGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaaca                                                    <  2:219810‑M1/250‑167 (MQ=255)                                                                                                                                                                                   tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttaactactggaactgtaataagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgaatt                                   >  1:456985‑M1/1‑68 (MQ=255)                                                                                                                                                                                              aagaaTAATTGACATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaggatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagta                           >  1:486487‑M1/1‑57 (MQ=255)                                                                                                                                                                                                gaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaagtattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttatccaatctctatttgattgaagtgaaagatgtttgttaaggcatggatgcaagctatagattcttatacggtcaataaaagataattgcttaacaattttgcaaaatgtattggcgagtaagaac                      <  2:271047‑M1/251‑197 (MQ=255)                                                                                                                                                                                                   tcattgAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGAGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctattagattgaattgaaagatgattgttaatgcatggatgcaagctatagattctgatacggtcactaaaagagaattgattaacaattttgcaaaatgtattggcgagtaagaaccgc                   >  2:64734‑M1/3‑52 (MQ=255)                                                                                                                                                                                                      ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgattaagaa                       >  2:229469‑M1/1‑49 (MQ=255)                                                                                                                                                                                                      ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaagaa                       <  1:229469‑M1/244‑196 (MQ=255)                                                                                                                                                                                                         aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatccattgttaaattattgtgcatttcactactggaactgtagtcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcagaatgtattggcgagtaagaaccgcatttgg             >  1:280202‑M1/1‑46 (MQ=255)                                                                                                                                                                                                                  tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaagaaccgcatttggtactttcc     <  1:78787‑M1/250‑214 (MQ=255)                                                                                                                                                                                                                    ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaagaaccgcatttggtactttccggg  >  1:170837‑M1/1‑35 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                         CAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTA  >  NC_000913/1299253‑1299714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.