New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 458795	26 (0.440)	4 (0.070)	4/474	4.3	13.3%	intergenic (+95/‑93)	clpX/lon	ATP‑dependent Clp protease ATP‑binding subunit ClpX/Lon protease
	?	NC_000913	= 609351	NA (NA)					noncoding (1345/1345 nt)	IS186	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCATCGTAGAAGCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTATCCGCACATGGTCATCCCCTTATTTGTCGGGCGGGAAAAATCTATCCGTTGTCTGGAAGCGGCGATGGACCATGATAAAAAAATT  >  NC_000913/458546‑459037                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                   caggcGTAGCAGCCGCACTGCGCGATGTCATGCCCGATCTGCCGATCATGGAAGACGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGTAGGAAGCGCAACAGGCATCTGGTGAATAATTAGCCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTT‑AATTTGTCCTCTATCCTCGGCGTTGTATGTGGGGGAAACATc                                                                                                                                                                                                                                                  <  2:237379/247‑1 (MQ=255)            gCCGCACTGCTCGATTCCATGTACGATATGCCGTCCATGGAAGACGTCGAAAAAGTGGTGATCGACTAGTCGGTAAGTGATGGTCAAAGCAATCCGTTGCTGATTTATGGAAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACt                                                                                                                                                                                                                                        <  2:56234/251‑1 (MQ=255)                        gATACCATGTTCGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTTATTTATGGCAAGCCGGAAGCGCAATAGGCATCTGGTGAATAAGTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGTGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATTTTGGGTAAACATCCCCATATACTGCCGTACATGtt                                                                                                                                                                                                                            <  2:38850/251‑1 (MQ=255)                             cATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAGACGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTTTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAg                                                                                                                                                                                                                       <  1:80526/251‑1 (MQ=255)                                                              aaaaGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTa                                                                                                                                                                                                                                  <  1:115167/207‑1 (MQ=255)                                                              aaaaGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTa                                                                                                                                                                                                                                  >  2:115167/1‑207 (MQ=255)                                                                   tGGTTATCGACGAGACGGCAATTGATGGTCAAAGCAAACAGTTGCTGATTTATGGAAAGCAGGAAGCGCAACCGGCATCTGGCGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGGTTTTATCTACCCTTTAATTTTTCCTATATTCACGTCGTTGAATGTGGGGGATACATCCCCATATACTGACGTACATGTTATTAGATGGCGTGAGACACCATTGTGGCATCTGATTCCCTGGc                                                                                                                                                                                 >  2:329324/1‑251 (MQ=255)                                                                                gTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCACGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACt                                                                                                                                                                     >  1:66187/1‑250 (MQ=255)                                                                                  cGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTa                                                                                                                                                                    >  1:293857/1‑249 (MQ=255)                                                                                  cGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAag                                                                                                                                                                  <  1:383253/251‑1 (MQ=255)                                                                                      aaTTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGTCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCGCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACTTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAATCTAagaga                                                                                                                                                               <  2:333063/250‑1 (MQ=255)                                                                                                                      aTGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGcaca                                                                                                                                                                                                        >  1:22182/1‑177 (MQ=255)                                                                                                                      aTGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGcaca                                                                                                                                                                                                        <  2:22182/177‑1 (MQ=255)                                                                                                                                ggAAGCGCCACACGCATCTCGTCAATAATTAACCATTCCCATTCAATTTGTTACCCCACAATGGGGGATTTTATCTCCCCTTTAATTTTTCTTCTATCCTCGGCGTTGAATGTGGGGTACCCAGCCCCATATACTGACGTACATGTTCATAGATGGCGTGACGCCCCGTCGTCTCACCTGATTCCCTGGCGGAAATTAACCTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGaacgcccc                                                                                                                    <  1:540903/251‑7 (MQ=255)                                                                                                                                     cgcaaacggCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGAGTTTATCGCCCCTTTAATGTTTCCTCGATTCGCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCTCAGTCGTGTCATCTGATGACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCAGTGAAAGCCCCGTAtt                                                                                                               <  2:676527/244‑1 (MQ=255)                                                                                                                                      gcAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTg                                                                                                              <  1:159568/251‑1 (MQ=255)                                                                                                                                            ggCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTg                                                                                                        <  1:263632/251‑1 (MQ=255)                                                                                                                                                   ggTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTAGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGAt                                                                                                  <  1:135180/250‑1 (MQ=255)                                                                                                                                                       aagaatgaaCCATGCCCATATAATTAGTTAACCAAAAATGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACAGCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATgtggt                                                                                             <  2:250700/244‑1 (MQ=255)                                                                                                                                                              aaCCATTCCCATACAATTAGTTAACCAAAAAGGGGTGATTTTATCTCCCCTTTAATGTTTCCTCTAATCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTa                                                                                       <  1:655162/250‑1 (MQ=255)                                                                                                                                                                 cATTCACATACAATTAGTTAACCAACCAGGGAGGATTTTATCTACCCTTTAATTTTTACTCTATTCACGACGTTGAATGTGAGGGAAACATCCACATATACTGACGTACATGTTAATAGTTGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAAAGAGCCCTATGAATCCTGAGCTTTCTGAACTCATTGAAATCCCAGTATTGCCGATGCGCGCTGGGGTGGGTTACCCg                                                                                   >  2:294857/1‑251 (MQ=255)                                                                                                                                                                      ccATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTATACGCACAt                                                                              >  1:163290/1‑251 (MQ=255)                                                                                                                                                                           cAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTATCCGCACATGGTc                                                                          >  1:448157/1‑250 (MQ=255)                                                                                                                                                                                                                 ttAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGCGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTATCCGCACATGGTCATCCCCTTATTTGTCGGGCGGGAAAGATATATCCGTTGt                                   >  2:127818/1‑251 (MQ=255)                                                                                                                                                                                                                 ttAATTTTTCCTCTATTCGCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAATCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTATCCGCACATGGTCATCCCCTTATTTTTCGGGCGGGAAAAATCTATCCGtt                                     <  1:604088/249‑1 (MQ=255)                                                                                                                                                                                                                            tctATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGAGGTTTATCCGCACATGGTCATCCCCTTATTTGTCGAGCGGGAAAAATCTATCCGTTGTCTGGAAgcggc                        >  1:444839/1‑251 (MQ=255)                                                                                                                                                                                                                                                  ggggAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTATCCGCACATGGTCATCCCCTTATTTGTCGGGCGGGAAAAATCTATCCGTTGTCTGGAAGCGGCGATGGACCATGATAAAAAAAtt  >  1:601816/1‑251 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                   CCATCGTAGAAGCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGCGATGTGGTGGTTTATCCGCACATGGTCATCCCCTTATTTGTCGGGCGGGAAAAATCTATCCGTTGTCTGGAAGCGGCGATGGACCATGATAAAAAAATT  >  NC_000913/458546‑459037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.