| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 310 | (T)9→8 | intergenic (+55/‑27) | thrL → / → thrA | thr operon leader peptide/fused aspartate kinase/homoserine dehydrogenase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 310 | 0 | T | . | 97.0% | 126.6 / ‑4.3 | 33 | intergenic (+55/‑27) | thrL/thrA | thr operon leader peptide/fused aspartate kinase/homoserine dehydrogenase 1 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (19/13); minor base C (0/1); total (19/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGAACTGGTTACCTGCCGTGAGTAAATTAAAATTTTATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGC‑ACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAATCAC‑CAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATT > NC_000913/74‑546 | tGAACTGGTTACCTGCCGTGAGTAAATTAGAATTTTATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGAGC‑ACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAACCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAgtaaa > 2:638676/1‑245 (MQ=255) actggtctccTGCCGTGAGTAAATTAAAATTTTATTGACTTAGGTAACTAAATACTTTAACCAATATAGGCATAGCGC‑ACAGACATATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTCCCACAGGTAACGGTGCGGGCTGACGCATACAGTAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAgg < 2:168758/243‑1 (MQ=255) aCTGGTTACCTGCCGTGAGTAAATTAAAATTTTATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGC‑ACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAgg > 1:117738/1‑251 (MQ=255) ccGTGAGTAAATTAAAATTTTATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGC‑ACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGC‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGc > 2:300529/1‑251 (MQ=255) aTTTTATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGC‑ACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGAAACGAGGTAACAACCATGCGAGTGTTGAAGTTcgg > 1:98042/1‑251 (MQ=255) tttATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGG‑ACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTcggc < 2:570276/250‑1 (MQ=255) ttATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGC‑ACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCGTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTcggcg < 1:430861/250‑1 (MQ=255) gACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGC‑ACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACAt < 1:300529/251‑1 (MQ=255) tCACTAAATACTTTAACCAATATAGGCATAGCGC‑ACAGACAGCTAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCCCCACCATTACCACCACCATCACCATTACCACAGGTACCGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCCTTTTTTT‑CGACCAAAGGTAACGAGGTAACACCAATGCGAGAGTTGATTTTCGGCGGTACATCAGTGGcg > 2:236283/1‑250 (MQ=255) aactACTTTAACCAATATAGGCATAGCGC‑ACAGAACGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGAGCGGGCTGACGCGTAAAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTA‑CGACCAAAGGTAACGAGGTAACAACAATTCGCGAGTTGAAGTACGGCGGGAAATCAGGGGCAAAtac > 2:629068/4‑249 (MQ=255) aaTACTTTAACCAATATAGGCATAGCGC‑ACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGc > 1:158704/1‑250 (MQ=255) aaCCAATATAGGCATAGCGC‑ACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGttt < 1:641063/251‑1 (MQ=255) aaCCAATAAAGGCATAGCGCCAATAACA‑ATAAAAATTTCAGAATTCCCAACATCCATGAAACGTATTAGCACCCCCCATACCCCCACCATCCCCAATACCACAGGTAACGGTGGGGGCTGGAGCGGTCAGGAAACACAGAAAAAAGCCCGGCCCTGA‑CAGTTCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTGCGGCGGTACATCAGTGGCAAATGCAGAACGttt < 2:98042/251‑1 (MQ=255) aaagTACAAAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGCGCTGACGCGTACAGGAAACACAGAAAAAAGCACGCACATGA‑CAGTGAGGACTTATTTTT‑CGACCAAAGGGAACGAAGTAACAACCATGAGAGGGTTGAGGTTAGCAGGGACAAAAGTAGCAACTGCAGAACGTTTGCTGTGGGTTGACGAAATTCTGGaaaagcattgcaggc > 2:433329/3‑238 (MQ=255) gTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAggcaggg > 1:518965/1‑251 (MQ=255) caacaTCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAggcaggggcagg > 1:255277/1‑251 (MQ=255) caacaCCCATGAAACGCATTAGCACCACCATTACCACCACCAGCACCATTACCACAGGTAACGGGGCGTGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAggcaggggcagg < 2:518965/251‑1 (MQ=255) acaTCCATGAAACGCATTAGCACCACCATGACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGAGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGGACATCAGTGGCAAATGAAGAACGTTTTATGTGGGTTGTCGCGATTCTCGAAAGCAATGcctggaagtgagagggg > 2:471157/1‑236 (MQ=255) cGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGAGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCctc > 1:23601/1‑251 (MQ=255) ttACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCaaa > 1:355054/1‑250 (MQ=255) cccactACCACAGGTAACGGTGCGGGCTGACGCTGCCGGGAAACACTAAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTGGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGCCAGGTGGC‑ACCGGCCCTCTCTGCCCCCGCCAAAATCAC‑CAACCACCtg < 2:122079/246‑1 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAATCcc‑ca > 2:183687/1‑217 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAATCac‑ca < 1:183687/217‑1 (MQ=255) gTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAATCAC‑CAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGcc > 1:270585/1‑249 (MQ=255) gTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAATCAC‑CAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAg < 1:535731/251‑1 (MQ=255) cAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCAGGCTTTTTTTT‑CGACCAAAGGAAACGGGGTAACAACCATGCGATTGTTGAAGTTCGGCGGTACATCCGTGGCAAATGCAGCACGTTTTCTGCGGGTTGTCGATATTCTGGAAAGCAATGCCAGGCAGGGGCCGGGGGCCGCCG‑CCATCTCTCCCCCCGCCACAATCAC‑CAACCACCTGGGGGCGGTGATTGAACAAACCATTacagcccagggt > 1:327687/1‑240 (MQ=255) acaGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAATCAC‑CAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTAcc < 1:638676/251‑1 (MQ=255) aaaaaaaaaaACCCCCACCTTAACAGTG‑GGGGTTTTTTTTCCGACCAAAGTTAAAGCGGTAACAACCATGCGAGGGTGTAAGTTCGGCGGTACATCAGTGGCAAATGCAGACCGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAATCAC‑CAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTAc < 2:158704/247‑1 (MQ=255) caaaaaaaaGCCCGCCCCGGA‑CGGTGCGGGCTTTTTTTT‑CTACCAAAGTTAGCGAGGTAACAACCGTGCGAGTGTGGAAGATGGGCGGTACATCAGTGGCAAGTGCAAACCGTTCTCCGCGGGTTGCCGATATCCTGGAAAGCAAGCCCAGGCAGGGGCGGGTGGCCACCG‑TCCTCGCTACCCCCGCCAAAATCAC‑CAACCACCTGGTGTCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTAccc < 2:310760/248‑1 (MQ=255) aGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAATCAC‑CAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTAcccc > 1:463083/1‑250 (MQ=255) aGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAATCAC‑CAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCa < 1:503385/251‑1 (MQ=255) cGCAACTGA‑CAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGAGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCCGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAAT‑ACACAACCACCTGGTGGCGATGCTTGAAAAAACCATTAACGGCCCGGATACTTTACCCCATATCAGCGAt > 2:587779/1‑251 (MQ=255) tGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAATCAC‑CAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTAtt > 1:12157/1‑251 (MQ=255) | TGAACTGGTTACCTGCCGTGAGTAAATTAAAATTTTATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGC‑ACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGA‑CAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCG‑TCCTCTCTGCCCCCGCCAAAATCAC‑CAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATT > NC_000913/74‑546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |