| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,683,483 | G→T | intergenic (‑36/+147) | dctA ← / ← pdeK | C4 dicarboxylate/orotate:H(+) symporter/c‑di‑GMP phosphodiesterase PdeK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,683,483 | 0 | G | T | 95.7% | 68.1 / ‑2.5 | 23 | intergenic (‑36/+147) | dctA/pdeK | C4 dicarboxylate/orotate:H(+) symporter/c‑di‑GMP phosphodiesterase PdeK |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (9/13); total (10/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.11e-01 | |||||||||||
CCTTCATGCTTTCCATGCCCGCAATGCCCGTTACGACGGTACAAAAGATGACAGGAGCGATGATCATCTTAATGAGCTTAACGAAGCCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGTTTGGGGTAGCTACTTTTCTTCCAGGTAACTCTCTTCGAAGATTTCAATAGGGAGTGGGCGAGCAAAAAGGAAGCCCTGGGCAATACCAACGCCCGCTTTTGCCAGC > NC_000913/3683243‑3683726 | ccTTCATGCTTTCCATGCCCGTAATGCCCGTTACGACGATACAAAAGATGACAGGAGCGATGATCATCTTAATGAGCTTAACGAAGCCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTAGCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTATAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTa < 2:112155/251‑1 (MQ=255) ttCATGCTTTCCAAGCCCGCAATGCCCGTTACGACGGAACAAAAGATGACAGGAGCGATGAACATCTTAATGAGCTTAACGAAGCCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTGCAGGATATAAATGGCCAAGGAGAATACCAATGGCTATCGCGGTCAGGACCTGAAAGTAAAGGCTTGTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTAc < 2:301389/250‑1 (MQ=255) tCCATGCCCGCAATGCCCGTTACGACGGTACAAAAGATGACAGGAGCGATGATCATCTTAATGAGCTTAACGAAGCCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCtt > 1:103901/1‑251 (MQ=255) ccGCAATGCCCGTTACGACGGTACAAAAGATGACAGGAGCGATGATCATCTTAATGAGCTTAACGAAGCCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATa > 1:266931/1‑250 (MQ=255) aTGCCCGTTACGACGGTACAAAAGATGACAGGAGCGATGATCATCTTAATGAGCTTAACGAAGCCGGCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACAccc < 2:103901/251‑1 (MQ=255) cGTTACGACGGTACAAAAGATGACAGGAGCGATGATCATCTTAATGAGCTTAACGAAGCCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGaca < 1:69100/251‑1 (MQ=255) gTTACGACGGTACAAAAGATGACAGGAGCGATGATCATCTTAATGAGCTTAACGAAGCCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGaca > 1:245734/1‑250 (MQ=255) aGCTTAACGAAGCCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTaa < 1:252824/251‑1 (MQ=255) cGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTg < 1:227261/251‑1 (MQ=255) gTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTgg > 2:191221/1‑251 (MQ=255) cGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGc < 1:122624/250‑1 (MQ=255) gCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTc < 1:311262/251‑1 (MQ=255) aaGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAACCAGAGAGGTTTTCATAGGGTGTCCTTTAGTCAAACCACAGGTCTTGTAAGTTTATGGGGTAACTGCGGCCTTAAAATAACACCCAGAAAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGATGGCTCGc > 2:8832/1‑250 (MQ=255) cTCGCCTCTTTAAGGGTAGAAATGGCCAAGGAGAATAACAATGGCTATCGCTATCAGGACCTGAAAGCAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATTACACCACGCCAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGATTGAGATGGCTCGCCCAAACCAgacctttt > 2:44156/1‑244 (MQ=255) aTAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATc < 1:196898/251‑1 (MQ=255) agaagaCCAAAGGCTATCGCTGTCATGACCTGAAAGGAAAGGCGTTTAAACAGAGAGGTTTGCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGATGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTTGATCATAATTGAAACAAAAAGGTTAAAAATTTTGTGCTGGTTCGCACAAACCAGCACTTTTTAAAGTTGTGTAATCAGTTTGGGTTAGCTa < 2:112027/250‑1 (MQ=255) aaTACCAAGGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGTTTGGGGTAGCTACtt < 2:245734/251‑1 (MQ=255) gagagGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACCGAAATGTACCTGGGTCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGAAATCAGTTTGGGGTAGCTACTTTTCTTCCAGGTACCTCTCTTCGAAGATTTCAATAGGGAGAGGGCGAGCa > 2:288089/1‑250 (MQ=255) tAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGGTTATGGGGTACCTGCGGCCTTACAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGTTTGGGGTAGCTACTTTTCTTCCAGGTAACTCTCTTCGAAGATTTCAATAGGGAGTGGGCGAGCAAAAAGGAAGCCCt > 1:41600/1‑251 (MQ=255) aGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGTTTGGGGTAGCTACTTTTCTTCCAGGTAACTCTCTTCGAAGATTTCAATAGGGAGTGGGCGAGCAAAAAGGAAGCCCTg < 2:43359/251‑1 (MQ=255) ggTGTCCTTTAGTAAAACCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAACAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGTTTGGGGTAGCTACTTTTCTTCCAGGTAACTCTCTTCGAAGATTTCAATAGGGAGTGGGCGAGCAAAAAGGACGCCCTggg > 2:62978/1‑251 (MQ=255) aaaaCCACAGGTCTTGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGTTTGGGGTAGCTACTTTTCTTCCAGGTAACTCTCTTCGAAGATTTCAATAGGGAGTGGGCGAGCAAAAAGGAAGCCCTGGGCAATACCAACGcc > 1:30034/1‑251 (MQ=255) tGTAAGTTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGTTTGGGGTAGCTACTTTTCTTCCAGGTAACTCTCTTCGAAGATTTCAATAGGGAGTGGGCGAGCAAAAAGGAAGCCCTGGGCAATACCAACGCCCGCTTTTgccagc < 1:288089/250‑1 (MQ=255) | CCTTCATGCTTTCCATGCCCGCAATGCCCGTTACGACGGTACAAAAGATGACAGGAGCGATGATCATCTTAATGAGCTTAACGAAGCCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGTTTGGGGTAGCTACTTTTCTTCCAGGTAACTCTCTTCGAAGATTTCAATAGGGAGTGGGCGAGCAAAAAGGAAGCCCTGGGCAATACCAACGCCCGCTTTTGCCAGC > NC_000913/3683243‑3683726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |