| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,680,490 | G→A | C752C (TGC→TGT) | yphG ← | DUF5107 domain‑containing protein YphG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,680,490 | 0 | G | A | 97.0% | 101.8 / NA | 33 | C752C (TGC→TGT) | yphG | DUF5107 domain‑containing protein YphG |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (13/19); minor base C (1/0); total (14/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
GTCGTTTCTCCGGTGTGGCTCCACTTAACTTATCCAGCAAATCCCGTTCGAAAAGCAGACGTGCATCCTGCGGCGCAAGCTGATAAGCATTATCAAGATAACGCGCGGCCAGCTCATAATCGTGTTGCTTATTCCACGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAGCAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTGCGCTGGCAGTCCAGTGCGTTCAGCATCTCTGCCGCCAGGGTGGGCATTCCCC > NC_000913/2680246‑2680716 | gTCGTTTCTCCGGTGTGGCTCCACTTAACTTATCCAGCAAAGCCCGTTCGAAAAGCAGACGTGCATCCTGCGGCGCAAGCTGATAAGCATTATCAAGATAACGCGCGGCCAGCTCATAATCGTGTTGCTTATTCCACGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCt < 1:26134/251‑1 (MQ=255) ggtgtgtccgcttaacttaTCCAGCAAACCCCTTTCGAAAAGAAGACGGGCATCCGGCGGCGCAAGCTGATAAGCATTATCAAGATAACGCGCGGCCAGCTCATAAGCTTGTTGCTTAGTCCACGCATGGATCGCTAACCCGCGCCAGCTGTCGGCAAACTCCGGCGACATCTCTACTCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAg < 2:128982/241‑1 (MQ=255) ttaTCCAGCAAATCCCGTTCGAAAAGCAGCCGTGCATCCTGCGGCGCAAGCTGATAAGCATTATCAAGATAACGCGCGGCCAGCTCATAATCGTGTTGCTTATTCCACGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTCGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTc > 1:318898/1‑251 (MQ=255) ccccGTTCGAAAAGCAGACGTGCATCCTGCGGCGCAAGCTGATAAGCATTATCAAGATAACGCGCGGCCAGCTCATAATCGTGTTGCTTATTCCACGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAg < 1:305180/250‑1 (MQ=255) gAAAAGCAGACGTGCATCCTGCGGCGCAAGCTGATAAGCATTATCAAGATAACGCGCGGCCAGCTCATAATCGTGTTGCTTATTCCACGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCa < 2:37530/251‑1 (MQ=255) aaaaGCAGACGTGCATCATGCGGCGCAAGCTGATAAGCATTATCAAGATAACGCGCGGCCAGCTCATAATCGTGTTGCTTCTTCCACGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTCGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGAAAA‑TG‑GCGAGCAAACCCGCACTCTTCAATACTCTCCACCGCCGCCAc > 2:274157/1‑251 (MQ=255) cGTGCATCCTGCGGCGCAAGCTGATAAGCATTATCAAGATAACGCGCGGCCAGCTCATAATCGTGTTGCTTATTCCACGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTcc > 1:108874/1‑249 (MQ=255) cgcAAGCTGATAAGCATTATCAAGATATCGCGCGGCCAGCTCATAATCGGGTTGCTTATTCCTCGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCCCTACGCAACGTTGCGAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAAc < 1:246116/251‑1 (MQ=255) aGCATTATAAAGATAACGCGCGGCCAGCTCATAATCGTGTTGCTTATTCCACGCATGGATCGCTCACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATATCTACGCAACGATGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAACCAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCg > 2:375115/1‑251 (MQ=255) acAAGATAACGCGCGGCCAGCTCATAATCGTGTTGCTTATTCCACGCATGTATCGCTACCCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAAGGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAT‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGAc < 1:38426/250‑1 (MQ=255) aaGATAACGCGCGGCCAGCTCATAAGCGTGTTGCTTATTCCACGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACCCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACAt < 1:286397/251‑1 (MQ=255) cAGCTCATAAGCGTTTTGCTTATTCCACGCTGGGACCGCTAACCCGCGCCAGCGGGCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCAAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGa < 2:108874/251‑1 (MQ=255) aGCTCATAACCGCGTTGCTTATACCACGCTTGGAGCGCAATCCCGCGCCAGCCGTCGGCAAACTCCGGCTACATCTCTACGAAATGTTGCCAAAAGGCAATGGCTTTGTTGTATCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑GG‑GCGATCAAACCAGCACTCTCCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGAc < 2:112294/251‑1 (MQ=255) gCTCATAATCGTGTTGCTTATTCCACGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGCCCTCAATGGCTTTTGCGAcc > 2:334082/1‑251 (MQ=255) cagaaTCGTGTGGCTTATCCCACGCTTGGATCGCTACCCCGCGCCAGCCGTCGGCAAACTCCGGCGACTTCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAg < 2:46238/247‑1 (MQ=255) cGTGTTGCTTATTCCACGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAACAGGCTATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGCAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGcc > 2:286841/1‑250 (MQ=255) aTCGCTCACCCGCGCCAGCCGTCGGCAAACTCCGGCGACAACTCTACGCAACGTGGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCCCTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCt < 2:79957/251‑1 (MQ=255) cgcCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTa < 1:59335/251‑1 (MQ=255) gTCGGCAAACGCCGGCGACATCTCTACGCACCGTTGCCAAAAGGCAATGGCTTTGTTTAAGCTACGTTTGTTGTAGT‑AGAAACAAGTTACTAAAGTGCGCGA‑CAAAC‑AGCACTCTTCAATACTCTCCAGCGCCGCCACTTCCTCCAGCGTATTCGGGAACCGGCCAAA‑CAGCGGGAAGACATCAATGGTTCTTGCGACCAGTTCTCCAAGTACGGCTTTCGGCAGCAAgatcatttgcaggtaacgcgccc > 2:53079/1‑229 (MQ=255) ggCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCg < 1:119819/251‑1 (MQ=255) cAAACTCCGGCGACCTCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTg > 2:240944/1‑251 (MQ=255) gCGACATCTCTACGCAACGTTGCAAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTGGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTGCGCTGGCAg < 1:334082/251‑1 (MQ=255) gACATGTCTAAGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGAACTCTTCAATACTATCCAGCGCCGCAACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGACGAAAGCTGGCTTGAAGGTAAAGGGGCAGCGGGGGCAGGCAGTc > 2:168297/1‑251 (MQ=255) aCGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTGCGCTGGCAGTCCAGTGCGtt < 1:80479/251‑1 (MQ=255) gtcAACGCTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTATAGT‑AGAAACAAGATAGTAAA‑TG‑GCGCGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGAATTCGGGAAACG‑ACAAAACTGAGGGAAGACATCAATGTCTTTTGCGACAAGTTCACCAGGTTCGGCTTTCGGAAGCAAGCTGGCTTGCATGTAAAGCGGCAGGGTGAGCTggagaacccgttcgttc > 2:206626/3‑236 (MQ=255) aacgtggaaaaaaGGAAATGGCTTTTTTGTAGTTACGTTTTTTGT‑GTGAGAAACAAGCTAGTAAT‑TG‑GCGAGCAACCCAGCACTCTCCAATACCCCCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTGCGCTGGCAGTCCAGTGCGTTCAGc < 2:241432/242‑1 (MQ=255) tGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTGCGCTGGCAGTCCAGTGCGTTCAGCAtctc > 1:292534/1‑251 (MQ=255) gCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTGCGCTGGCAGTCCAGTGCGTTCAGCAtctc < 1:73040/250‑1 (MQ=255) cAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTGCGCTGGCAGTCCAGTGCGTTCAGCATCTCTgc > 1:65281/1‑251 (MQ=255) aaaGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTGCGCTg > 1:347804/1‑222 (MQ=255) aGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGCAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGACTTGAAGGTAAAGCGGCACAGGGCGCTGGCGGTcacgggcggtccgcatctttgacccc > 2:339060/1‑226 (MQ=255) gCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACGCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTGCGCTGGCAGTCCAGTGCGTTCAGCATCTCTGCCGCCAGGGTggg < 2:261659/251‑1 (MQ=255) gtatcTACGTTTGTTGTAGT‑AGAAACAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCCCTCTTCAATACCCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTGCGCTGGCAGTCCAGTGCGTTCAGCATCTCTGCCGCCAGGGTGGGCATTcccc < 1:240944/247‑1 (MQ=255) | GTCGTTTCTCCGGTGTGGCTCCACTTAACTTATCCAGCAAATCCCGTTCGAAAAGCAGACGTGCATCCTGCGGCGCAAGCTGATAAGCATTATCAAGATAACGCGCGGCCAGCTCATAATCGTGTTGCTTATTCCACGCATGGATCGCTAACCCGCGCCAGCCGTCGGCAAACTCCGGCGACATCTCTACGCAACGTTGCCAAAAGGCAATGGCTTTGTTGTAGCTACGTTTGTTGTAGT‑AGAAGCAAGCTAGTAAA‑TG‑GCGAGCAAACCAGCACTCTTCAATACTCTCCAGCGCCGCCACTTCTTCCAGCGTATTCGGGAAACGGACAAA‑CTGCGGGAAGACATCAATGGCTTTTGCGACCAGTTCGCCACGTTCGGCTTTCGGCAGCAAGCTGGCTTGCAGGTAAAGCGGCAGCGTGCGCTGGCAGTCCAGTGCGTTCAGCATCTCTGCCGCCAGGGTGGGCATTCCCC > NC_000913/2680246‑2680716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |