| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,358,859 | 0 | T | C | 90.9% | 84.6 / ‑5.9 | 33 | Y110C (TAT→TGT) | puuP | putrescine:H(+) symporter PuuP |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (15/15); minor base A (2/1); total (17/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.08e-01 | |||||||||||
GTGCCAACGCCTTCTCCTTTATGCAGTCCCTGAACTACCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGATAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGCCAGACC > NC_000913/1358619‑1359097 | gTGCCAACGCCTTCTCCTTTAGGCAGTCCCTGAACTACCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATGGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCcagcag < 2:189623/251‑1 (MQ=255) gCCTTCTCCTTTATGCAGTCCCTGAACTACCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGTACACACAGGGAATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGCTAAAATGACGGCGCAGGGTACCACCCCCACCCACAGCAGCACATCCGCGAAGAGGGGGGGGAGAAAGGATTTCGCCCACCAAACGGTTATTATCG‑G‑GAAAAAGAGACAATCCAGCAGCGATTAcc > 1:19751/1‑251 (MQ=255) ccTTCTCCTTTATGCAGTCCCTGAACTACCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTCTTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGCTAAAATGGCGGCGCAGGTTACCCCCCAACCCCACGCCGGCACTTCCCGGAAGAGGGGGGAGAGATAAATTTTCGCCAAACAGACGATAATAATCG‑GGCAAAAA‑AGACAATCCAGCAGCGATGAcc > 2:32282/1‑250 (MQ=255) cccTGAACTACCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTAGTGAAGTTTGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGATAGATATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCACCCGACCAGAAATCCGAc < 2:216938/251‑1 (MQ=255) aaaCACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAAGCCGACGTGCGGGTTAATCGACtttt < 1:302076/251‑1 (MQ=255) aaCACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTAACACCCACAACCACGGCGGCACTTCCGGGAAGAGGGCGGGGAGATAGGTTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGGGAAAATCCAGCAGCGATGACCAGCCGACCATAAAACCGACGAGCGGGGTAATCGACTTTTg > 1:346198/1‑251 (MQ=255) aaCACCACCATGATGGAGATTGGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTg < 1:109720/251‑1 (MQ=255) tGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATAGGGACGAAGGTTACCACCCCCACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGGGGTAGATTTTTGCCACAAAGGCGTTTATCATCGAG‑AAAAAAGA‑ACAAACCCCCAGCGATGACCAGACCACCAAAAATACGCCGTGAGGGTTAATAGACATTTGcgcggtggtaatagccgcac > 2:259975/1‑234 (MQ=255) aCAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGGGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGGGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCCCCGGAAAc > 1:192251/1‑251 (MQ=255) cAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGGCGAAGGGTTCCACCCACACCCCCCGCGGCCATTCCGGGAAGAGGGGGGGGAGATCGATTTTTGCCCACCAAACGTTAATCATCG‑G‑CAAAAAGAGACAAACCCACAGCGGTGCCCAGCCCCCCATAAAAACGACCGGCGGGGTAATCGGCCTTTGCGCGTAGGGATAGGCCGCAcccgaccccgggacac > 2:17581/1‑237 (MQ=255) aGGGTATTGAAGTTAGCGACCAGGTTGCAGGTCTTCAGATGCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTg < 2:273143/251‑1 (MQ=255) ccAGGTTTACTCTCGTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAg < 1:369903/251‑1 (MQ=255) ccAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAg < 1:158007/251‑1 (MQ=255) gACGCCCTGCAGATTCGCGGCTGTTAAAATGGCGACGAAGGTTACCTCCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATa < 2:61995/250‑1 (MQ=255) ggTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑Ccgcc > 1:96626/1‑250 (MQ=255) aaaaTGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGCACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑Ccgcacgcac > 2:259259/1‑245 (MQ=255) cacGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTc > 1:54829/1‑251 (MQ=255) acGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGta > 2:108549/1‑143 (MQ=255) acGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGta < 1:108549/143‑1 (MQ=255) acGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCg > 1:305915/1‑251 (MQ=255) gcACTTCGGGGAAGAGGCCGGAGAGATAGATTTCCGCAAACAAGACGTTAACCATCG‑G‑CAAAAAGAGAAAATCCAGCAGCGATGCCCAGCCGACCATAAACCCGACGTGCGGGTTAATCGTCTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACGGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATg < 2:192251/251‑1 (MQ=255) cACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGCCCAGCCGACCATAAACCCGACGTGGGGGTTAATCGCCTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCATTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGc < 1:173208/251‑1 (MQ=255) ccGGGGAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCgg > 2:367940/1‑249 (MQ=255) gatagatTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATc > 1:12757/1‑250 (MQ=255) atagatTTCCGCCAAAAAGGCGTTAACCATCG‑G‑AAAAAAGAGACAACCCAGCAGCGAGGACCAGCCAACCATAAATCCGCCGTGCGGGTTAATCGACTTTTGCGCGTGGGTATAGGCCGAACCGGCCTCCGGAAACTGGCAAACCAGTTTGCCGAAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTTACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCaa < 1:106092/251‑1 (MQ=255) agatTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAACGAGAAAATCCAGCAGCGATGACCAGCCGTCCATAAATCCGACGAGCGGGATAATCTACTTTTGCGCGTAGGTATAGGACGAACCGGCCTCCGGAAACAGGCGAACACGTTTGCCGTAGCTGATAGCGGGAAACAGCACAC‑CAGCCACCGCGAGCAAATAGGACGCCGAAACGTGACCGTCGCCAATGCCGGAGACAATACCaaaaataacaca > 2:101176/1‑242 (MQ=255) tccccaacacaaataaaaTCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGAAGCCCAGCCGACCAAAAACCCGCCGGGCGGGTAAATCGACTTTTGCGCGTGGGTATAGGCCGACCCGGCCGCCGGAAACTGGCGACCCAGTTTGCCGTAGCGGATAGCGGTAAACAGACCAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACg < 2:346198/232‑1 (MQ=255) gACGTTAATCATCG‑C‑CAAAAAGAGACAACCCAGCAGCGATGACCAGCCTACCATAAACCCGACGTGCGGTTTAATCTACTTTCGCGCGTAGGTAGAGGCCTAACCGGCCCCCGTAACCTGGGGACCCAGTGTGCCGTAGCTGATAGCGGGAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGGGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTga < 1:26526/251‑1 (MQ=255) gcgtaaaacagcggaaaaaaGAGACAATCCAGCGGCGATGACCCTCGGACAATAAACCGGAGGGGCGGGTTAATCGCCTTTGGCGCGTAGGTATAGGCGTAACCGGCCTCGGGAACCTGGCGACCCATTTGGCCTTAGTCGAAAGCGGAAAACAGCA‑ACGCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGGCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTgag < 1:40367/236‑1 (MQ=255) tAATCATCG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCCGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAACGAATCAAATACGGTCATCGGCGTGAGAt > 2:206327/1‑249 (MQ=255) atcatcG‑G‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGc > 1:280253/1‑251 (MQ=255) cG‑G‑CAAAAAGAGACAATCCGGCAGGGTTGCCCAGCCGACCATAAATCCGTCGTGCGGGTTAATCGACTTTGGCGCGTAGGTAAAGTCCGAACCGGCCCCCGAAAACTGGCGAACCAGTTGGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGCCAGa < 1:224857/250‑1 (MQ=255) g‑g‑CAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGCCAgccc > 1:363145/1‑248 (MQ=255) | GTGCCAACGCCTTCTCCTTTATGCAGTCCCTGAACTACCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCG‑G‑CAAAAAGAGATAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACAC‑CCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGCCAGACC > NC_000913/1358619‑1359097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |