| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 3,189,672 | IS5 (–) +4 bp | pseudogene (2241‑2244/2434 nt) | yqiG → | putative outer membrane usher protein YqiG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 33 (0.910) | 30/486 | 0.3 | 97.0% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3189675 | 1 (0.030) | pseudogene (2244/2434 nt) | yqiG | putative outer membrane usher protein YqiG | |||||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 23 (0.640) | 22/486 | 0.5 | 95.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3189672 = | 1 (0.030) | pseudogene (2241/2434 nt) | yqiG | putative outer membrane usher protein YqiG | |||||
GAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCAT‑CAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGC > NC_000913/2288672‑2289158 | gatcAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCAT‑CAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaagga < 1:4774/247‑1 (MQ=255) aTTTGATAACCGTCATTTAATACTGATTATTCTTCGGCGCATTTTATTTTAATGTCATGGTACCCGCCGTTAATTTCAGTATGATTACTTACGCCAAAGTCTTTTATTTGCTGTTCTCCGCCAGGATTGATTTTCGTATTAGTGGCGGTCCCAGAAACCAGCTGGATATCTTTTTCCAGGAAAACACCAT‑CAACTGGCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGc < 2:16522/251‑1 (MQ=255) aTTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATCTCTTTTTTCAGGACAACACCCT‑CAACTGTCTCACCAAACTCAACAGTTGGTGCCCATGCTATGGGGGGATATAAAGAAGGTGGGTATAAGCGGGGGAATTCTTTTCGGCTg > 1:250406/1‑251 (MQ=255) gATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCAT‑CAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg < 2:334196/251‑1 (MQ=255) tttCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCACGTGGATATCTTTTTCCAAGCCAACACCCTACAA‑TGTCTCACCCTACTCGACAGTTGATGCCAATACTATGGGTGAATATAAGGAAGGTGCGACTAAACGGGGAACTTCTTCTCCGCTGAATCAGTCATTTTCTTTCTTCATGTTTGCGCCGGTTTTTTTTccc > 1:372780/1‑251 (MQ=255) ccAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGGTATCTTTTTCCCGGACAACACCAT‑CCACTGTCTCACCATACTCAACAGTTGTTGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGCAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGcc > 1:189617/1‑251 (MQ=255) tttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCAT‑CAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGa < 2:373814/250‑1 (MQ=255) tataTGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATACACCCGCTGGATATCTTTTTTCACGAAAACAACAA‑CAACTGTCTCACCATAATCAACAATTGATGCCCATGCTATGGGTGAATATAAAGAAGGAGCGAATAAGCGGGGAAATTCTTCTCGGCCGACTCCGTCATTTCCTTTCTTATTGTTTTAGCCGATTTTTTCTTCCGTAAATTCCTTGAATCAGCCTATTTAGACCg > 1:42578/1‑251 (MQ=255) atGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCAT‑CAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGtt < 1:188672/250‑1 (MQ=255) attTTCGTATTATTGGCGGTCCCAAAAACCAGCTGGATATCTTTTTCCAGGACAACACCAT‑CTACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc < 2:200531/251‑1 (MQ=255) gTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCAT‑CAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTg > 1:61057/1‑247 (MQ=255) ccAGGACAACACCAT‑CAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCTGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCg < 1:342343/251‑1 (MQ=255) ggttaaTATAAGGAAGGTTCGAATAAGCGGGGAAATTCTTCCCGGCTTACTCAGTCAGTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAGGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTGTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCTCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGc < 2:202675/247‑1 (MQ=11) | GAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCAT‑CAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGC > NC_000913/2288672‑2289158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |