New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 683090	1 (0.030)	20 (0.550)	19/486	0.7	95.2%	coding (304/1671 nt)	hscC	chaperone protein HscC
	?	NC_000913	687851 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

ACGTCAAACGTGCCGCCACCGAGATCAAACACCAGCGAACGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGATTATTTTCATCCATGCTAATTATGGATGGTGTTAAATATTCACCGAACTTATTTGGAATTAATTGCGCGGCACCGTCTTTCCAGACGG  >  NC_000913/682855‑683335                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                      aCGTCAAACGTGCCGCCACCGAGATCAAACACCAGCGAACGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataa                                                                                                                                                                                                                                        <  1:236657‑M1/251‑16 (MQ=255)                  cccgAGATCAAACACCAGCGAACGGGTATTTTGTTGGGTATGCAGGCCATACGCCAGCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctc                                                                                                                                                                                                                       <  2:74345‑M1/250‑33 (MQ=255)                     gagaTCAAACACCAGCGAACGGGAATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGATCATTAATTAAGAGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataagcgggggaattcttctcggc                                                                                                                                                                                                                    >  1:262044‑M1/1‑216 (MQ=255)                           aaaCACCAGCGAACGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCCTTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactc                                                                                                                                                                                                              >  1:49940‑M1/1‑210 (MQ=255)                                                                                                    aaGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgt                                                                                                                                     >  2:84372‑M1/1‑137 (MQ=255)                                                                                                                    aCCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgcatcagcctatttagaccgtttcttcgccattta                                                                                                                       >  2:285096‑M1/1‑121 (MQ=255)                                                                                                                     cccGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaagg                                                                                                                    >  1:351724‑M1/1‑120 (MQ=255)                                                                                                                             aCTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCCGAAATAAGCCGGAACGTAGATCAACACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCAGCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggcttactcagtcatttcatttcttcatgtttgagccgattttttctcccggaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatcc                                                                                                            <  1:344299‑M1/251‑140 (MQ=255)                                                                                                                                                                              cGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccg                                                           <  1:84372‑M1/251‑189 (MQ=255)                                                                                                                                                                              cGGAACGGAGATCACCACATCTTTAAGCGGACGTTGCAGAAAGTTGTCGGCATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttgtagtgagatctctcccactgacgtatcatttggtccgcccg                                                           <  2:351724‑M1/251‑189 (MQ=255)                                                                                                                                                                               ggAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTAAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgag                                                                                                                                                                                    >  1:304368‑M1/1‑62 (MQ=255)                                                                                                                                                                               ggAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTAAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgag                                                                                                                                                                                    <  2:304368‑M1/129‑68 (MQ=255)                                                                                                                                                                                      agaTCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggt                                                   >  1:331915‑M1/1‑55 (MQ=255)                                                                                                                                                                                      agaTCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggt                                                   <  2:304485‑M1/251‑197 (MQ=255)                                                                                                                                                                                           accacATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggcc                                              <  1:232496‑M1/251‑202 (MQ=255)                                                                                                                                                                                                      aaTCGGACGTTGCTGAAATTCTTCGGCTTCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggctggctcagtcatttcattacttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccacagacgtatcatttgttcctcccgaaaccggttggccagcgtgaata                                    <  2:49940‑M1/250‑212 (MQ=255)                                                                                                                                                                                                         cGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGATTATTTTCATCCATGCTAATTATGGATGGTGTTAAATATTCACCGAACTTATTTGGa                                 >  1:156071/1‑250 (MQ=255)                                                                                                                                                                                                                    gAAATTCTTCGGCATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggcaagcgtgaataacatcgccagttggt                     >  2:308298‑M1/1‑25 (MQ=255)                                                                                                                                                                                                                       aTTCTTCGGTATCTTCTTTTAAggaaggtgcgaataagcggggaaattcttctctgctgactcagtcattttatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttat                  <  1:359969‑M1/251‑230 (MQ=255)                                                                                                                                                                                                                            tcGGCATCTTCTTTTAAggaaggggcgactaagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttatcgttt             >  1:280900‑M1/1‑17 (MQ=255)                                                                                                                                                                                                                                       ttttAAggaaggtgcgaataagcggggagattcttctcggctgactcagtcatttcatttcttcatgtttgcgccgattttttctcccgtaaatgccttgaatcagcctatttagcccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgattaacatcgccagttggttatcgtttttcagcaaccc  >  2:379493‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                      ACGTCAAACGTGCCGCCACCGAGATCAAACACCAGCGAACGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGATTATTTTCATCCATGCTAATTATGGATGGTGTTAAATATTCACCGAACTTATTTGGAATTAATTGCGCGGCACCGTCTTTCCAGACGG  >  NC_000913/682855‑683335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.