Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,271,657 IS5 (+) +4 bp coding (190‑193/1101 nt) chaA ← Na(+)/K(+):H(+) antiporter ChaA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 275149NA (NA)35 (0.970) 32/486 0.2 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 = 1271660 0 (0.000)coding (190/1101 nt) chaA Na(+)/K(+):H(+) antiporter ChaA
* ? NC_000913 1271657 =0 (0.000)18 (0.500) 18/486 0.8 100% coding (193/1101 nt) chaA Na(+)/K(+):H(+) antiporter ChaA
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region

GAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTA  >  NC_000913/275010‑275189
                                                                                                                                           |                                        
gAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGACGGCCCTTTTTGTATCTGatta  <  1:61892/180‑1 (MQ=255)
                                                                                                                                           |                                        
GAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTA  >  NC_000913/275010‑275189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.