| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,639,440 | C→T | T421T (ACC→ACT) | creD → | putative inner membrane protein CreD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,639,440 | 0 | C | T | 93.1% | 76.0 / ‑3.4 | 30 | T421T (ACC→ACT) | creD | putative inner membrane protein CreD |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (15/12); total (16/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.91e-01 | |||||||||||
ATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTT > NC_000913/4639214‑4639679 | atatcGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGTTAATGAACGGTATTTATTTGCAGGCGGTATTGAAAGGCTGGCGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGttt < 1:314011/247‑1 (MQ=255) cggtttttcttgtgCATGGCTAATCGTCTGTCTGTTTGGTGCGTTAATGAACGGTATTTATTTGCAGGCGGTAGTGAAAGGTTGGCGTAACAGCTTGTGGTTGTCCCTCGCGCTGTTTTTGCTGGATGTTGTGATGTGGGGACTGCTCATCTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCTGGCATGATGTTTGTGACTCGTAATATCGACTTGTATGCGGTTTCa < 2:476684/237‑1 (MQ=255) aTGGCTAATCGCAAGGCTGAGTGGGGATTTAATGATCGGTTTTTATTTGCAGGCGGTATTGAAAGGCTGGCTCAACATCATGTTGTTTTCCCTCTCGCTGGTGTTGCTGGAGGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGTCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAg < 2:406393/251‑1 (MQ=255) cAGTCTGATTGGGGCGTTAATGAACGGTATTTATTTGCAGGCGGTATTGAAAGGCTGGCGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGGTGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCCGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGGTGTTTTTGACTCGTAATATCGACTGGGATGCGTTTTCACTGCCGAAAATGAAAACCAGTaaaaaa > 2:185456/1‑247 (MQ=255) ggggCGTTAATGAACGGTATTTATTTGCAGGCGGTATTGAAAGGCTGGCGCAACAGCATGTTGTTTAACCTCGCGCTGTTGTTGCTGGGTGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACaaaggg > 1:371056/1‑247 (MQ=255) ggatttatttGCAGTTGGGATTGAAAGGCGGGCGCAACATCATGTGGTTTACCCTCTCGCTTTTGGTGCTGGATGGTGTGAGTTGGGGACTGCTGAACTCTGCCGATAGCGCGCTGTTGTGGGGAACCATTTTGCTG‑GTGGTGGCGCTGGCCGGCATGATGGTTGTGACTGGTAAGATCGACTTGTATGCGTTTGTACGGCCGAAAATGAAAGCCAGTAAAGAAGTTACaatggtcgcgcaattacgtatc < 2:22394/249‑21 (MQ=255) gTATTTATTTGCAGGCGGTATTGAAAGGCTGGCGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGGGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCCTGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTAAGTATc > 1:390815/1‑251 (MQ=255) tatttGCAGGCGGTATTGAAAGGCTGGCGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGa > 1:234528/1‑250 (MQ=255) tttGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAAt > 1:246786/1‑251 (MQ=255) gcgtgtggTATTGAAAGGCGGGCGCAACAGCATGTTGTGATCCCTCGGGCTGTTGGTGCTGGAGGGTGTTATGTTGGGCCTGCTCAACTCGGCCGATAGCGAGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATAAAGACTGGTATGCGTTTTCACTGCCGAATATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATaa < 2:163111/244‑1 (MQ=255) tATTGACAGGCTGGCGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGGTCAATTACGTATCTGGAAATAAGGTTGaaa > 2:114320/1‑250 (MQ=255) tggcgCAACAGAATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGCCTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTATCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGTACAATTACGTATATGGAAATAAGGTTGAAAAATAAAAACggg > 2:50287/5‑250 (MQ=255) gCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGCAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATaaaa > 2:426654/1‑242 (MQ=255) gCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATaaaa < 1:426654/242‑1 (MQ=255) ggCATGTTGTTTACCCACGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCGGCCGATAGCGCGCGGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGAATCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAg < 2:40980/250‑1 (MQ=255) tttACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGtttt > 1:159240/1‑251 (MQ=255) cccTCGCGCTGTGGTGGATGGATGGTGTGATGTGGGGACTGCTCAACCCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGtttttttt < 1:101359/251‑1 (MQ=255) cctcggtgagtttgtgttGGATGGGTTGAGGTGGTGACTGTGCAACTCTGCCGATTGCTGGCTGTTGTTGGGAACCAGGGTG‑TGTGTGGTGGTGTTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAAGTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGgttttttga < 2:441729/234‑3 (MQ=255) tgttgtTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTaaaaa > 1:353107/1‑228 (MQ=255) tgttgtTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTaaaaa < 2:353107/228‑1 (MQ=255) gCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCg > 1:158824/1‑251 (MQ=255) tgATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTcc > 2:97757/1‑251 (MQ=255) ggACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCAcc > 2:245464/1‑251 (MQ=255) aTAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTc > 1:289328/1‑250 (MQ=255) aTAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGACACCCTTc > 2:370101/1‑250 (MQ=255) gggAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTTGCTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAATTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGGTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCga < 1:286148/251‑1 (MQ=255) cAGTGTGGTG‑GGGGGGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGAttt < 2:208651/251‑1 (MQ=255) atggtgTTTGTGCCTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGTTCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAACCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGTTGGTGGCGATGATTTCCGGCGTATCCGGGGTAGATTCGAAATg > 2:290076/5‑251 (MQ=255) atgatgTTTGGGAAACATAATAACGAATGGGATGCGTTTTCACTGCCGAAAAGGAAAGCCAGTAAAGAAAGTAAAATGGACGATCAATTACGTAACTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATg < 2:480687/251‑1 (MQ=255) atgTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCGCAGAAGCGATAACCTGCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGttt < 2:246786/251‑1 (MQ=255) | ATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG‑GTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTT > NC_000913/4639214‑4639679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |