| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,627,689 | T→C | R125R (CGT→CGC) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,627,689 | 0 | T | C | 97.3% | 111.1 / NA | 37 | R125R (CGT→CGC) | nadR | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (12/24); minor base G (1/0); total (13/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTACCCACTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCA‑GCCGACCGTGCCGGATCGTCTGCGTTGGT‑TATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATC > NC_000913/4627449‑4627932 | gcAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TAttac < 1:215229/251‑3 (MQ=255) cAAAAGCTGGAGGCGTTGCACCGTTTGTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TAttaca < 2:6650/251‑4 (MQ=255) aaGCTGGAGCCGTTGCACCGCTTTTTGGGGCTTGAGTTTCCCCGGGAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTTCCCGCTGCATACCGGTCATATCTACCTTATCCAGCGCGCCTGTAGCCTGTTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCTCGATCGCGCGTTGTTTGAAGACATCGCTATGTCGCAGCA‑TCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAAc < 1:486055/251‑1 (MQ=255) cTGGCGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCA‑CACGCCCACCGTGCCGGATCGGCTGCGCTGGT‑TATTACAAACttt > 2:92958/1‑251 (MQ=255) ggCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAat > 1:502069/1‑251 (MQ=255) gTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGG‑TATTACAAACTTTTAAATATc > 1:475579/1‑251 (MQ=255) gCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGa < 2:90311/251‑1 (MQ=255) gTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTGTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAat < 1:20338/251‑1 (MQ=255) ggggTTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCTCCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCa < 2:94924/251‑1 (MQ=255) gggCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCATCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCAt < 1:244186/251‑1 (MQ=255) ggCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATAGCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCAtt < 2:254648/251‑1 (MQ=255) gCTTGAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTc < 1:235003/251‑1 (MQ=255) gAGTTTCCCCGGCAGAAGAAAACCATTGGTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGACATATTTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATAGCATTATGGGTTTTGACGATTCCCGCGATCGCTCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATg < 1:464361/250‑1 (MQ=255) gCAGAAGAAAACCATTGGTGTGGTATTCGGTAATTTCTACCCGCTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTATCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAag < 1:506993/251‑1 (MQ=255) aaaccattggTGTGGTATTCGGTAAGTTCTACCCGCTGCATACCGGCCATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTAATGCTTTCAACGAAGAGGGCATg > 2:354888/9‑251 (MQ=255) ccattggTGTGGTATTCTGTAAGTTCTACCCGCTTCATCCCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATAGCAGTATGTGTTTTGACGATCCCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGACCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATGCGCATTCATGCTTTCAACGAAGAGGGCATGGAg < 1:90778/246‑1 (MQ=255) gTATTCGGTAAGTTCTACCCGTTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCa < 1:430250/251‑1 (MQ=255) aCCCGCTGCATACCGGACATATCAACCTTAACCAGCGCGCCTGTACACAGGCTGACGACCTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGACCACAGCGCTATGTCGCAGCC‑GCCCACCGTGCCGGATCGTCTGCGGTGGTCTAT‑AAAAACTTTTAAAAATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGAATCCGCAGGGCTGGCGTGTGTgg > 2:68995/1‑251 (MQ=255) cccgcTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTAGGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGa < 2:356291/247‑1 (MQ=255) ccGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGGTTTGACGATACCCGCGATCGCGCGTTGGTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATc < 2:414271/251‑1 (MQ=255) aCCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTa < 1:192139/249‑1 (MQ=255) cTTATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGGATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGc > 1:23735/1‑251 (MQ=255) ttATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TAttaca > 2:455801/1‑136 (MQ=255) ttATCCAGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGAGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TAttaca < 1:455801/139‑4 (MQ=255) aGCGCGCCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGATTTGACGATACCAGCGATAGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGACGGCTCGTCTGCGCTGGT‑TATTACAACCTTTTAAATATCAGAACAATATTCGCATTCATGCTTTCAACGAAGAGGGACTGGAGCCGTATCCGCACGGCTGGGATTGGTGGGACAACGGCATCAAGAATTTAATGGCTGaaccg > 2:158536/1‑248 (MQ=255) cgcgcCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGaaaaggg < 1:279793/251‑4 (MQ=255) cgcCTGTAGCCAGGTTGACGAACTGCATATCATTATGGGTTTTGACGATACCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGa < 1:225938/251‑1 (MQ=255) gTAGCCAGGTTGACGAACTGCATTTCATTATGTGTTTTGACGATTCCCGCGATCGCGCGTTGTTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGATTCAg < 1:38958/251‑1 (MQ=255) ttGACGAGACCCTCGATCGCGCGTTGTACGAAGACAGCGATATGTCGCAGCA‑GCCCACCGTGCCGGATCGTGTGCGCTGGT‑TATTACAAACTTTTGAATATCAGAAAAATATTCGCATTCTTCCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGAtg < 1:300770/168‑1 (MQ=255) cccgcgagcgcgcgTTGGTTGAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACGTTTAAATATCAGAAAAATATTCGCATTCAGGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATTTGTGGATCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGATTCAGCCGGACCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGtat < 2:475579/243‑1 (MQ=255) tgAAGACAGCGCTATGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGCTTCAGCCGGACCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCg > 2:374045/2‑251 (MQ=255) agcgctaTGTCGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGATTCAGCCGGACCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGATACGGt < 1:107370/245‑1 (MQ=255) cGCAGCA‑GCCCACCGTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGATTCAGCCGGACCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGATACGGTGCTGGTCGa < 1:12750/250‑1 (MQ=255) gTGCCGGATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGATTCAGCCGGACCTGATCTACACCTCGGAAGAAGCCGATGAGCCACAGTATATGGAACATCTGGGGATCGATACGGAGCTGGTCGCTCCGAAACGTACCtt > 1:307202/1‑251 (MQ=255) ggATCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGATTCAGCCGGACCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGATACGGTGCTGGTCGATCCGAAACGTACCTTTATgg > 2:198064/1‑250 (MQ=255) aTCGTCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGATTCAGCCGGACCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGATACGGCGCTGGTCGATCCGAAACGTACCTTTATGAGt > 1:281415/1‑251 (MQ=255) tCTGCGCTGGT‑TATTACAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAGGGGATTCAGCCGGACCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGATACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATc > 1:75466/1‑250 (MQ=255) | GCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTACCCACTGCATACCGGACATATCTACCTTATCCAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCA‑GCCGACCGTGCCGGATCGTCTGCGTTGGT‑TATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATC > NC_000913/4627449‑4627932 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |