Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,618,717 T→G A163A (GCT→GCG deoA → thymidine phosphorylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,618,7170TG88.6% 90.4 / ‑0.6 35A163A (GCT→GCGdeoAthymidine phosphorylase
Reads supporting (aligned to +/- strand):  ref base T (2/2);  new base G (19/12);  total (21/14)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CACTCCACCGGTGGCGTCGGCGATGTGACTTCGCTGATGTTGGGGCCGATGGTCGCAGCCTGCGGCGGCTATATTCCGATGATCTCTGGTCGCGGCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGTTCACTGGCTCCGGCTGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTGTTGGCGTGGCTAACGGCGCTGGCGTGCGCACCACCGCGCTGCTCACCGA  >  NC_000913/4618481‑4618950
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                           
cattCCACTGGTTGCTTCGGCGATGTGACTTCGCTGATGTTGGGGCCGATGGTCGCAGCCTGCGGCGGCTATATTCCGATGATCTCTGGTCGCGGCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTa                                                                                                                                                                                                                               <  1:9/248‑1 (MQ=255)
cattCCACTGGTGGCGTCGGCGATGTGACTTCGCTGATGTTGGGGCCGATGGTCGCAGCCTGCGGCGGCTATATTCCGATGATCTCTGGTCGCGGCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTa                                                                                                                                                                                                                               <  1:354455/248‑1 (MQ=255)
               gTCGGCGATGTGACTTCGCTGATGTTGGGGCCGATGGTCGCAGCCTGCGGCGGCTATATTCCGATGATCTCTGGTCGCGGCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTAAGCGACCCGTGatat                                                                                                                                                                                                                <  1:273074/251‑1 (MQ=255)
                 cGGCGATGGGACTTCGCTGATGTTTGGTCCGATGGTCGCATCCTGCGGCGGCTTTATTCCGATGATCTGTGGTCGCGGTCTCGGTCATACTGGCTGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGGCAGTTTCCCGGATGACAACCGTTTCCTCGAAATTAGTAAAGACGTCGGGGTGGCGATTATCGGTCAGACCATCTCACTGGCTCCGGCTGATAAACGTTTCTACGCGCCCCCTGatatc                                                                                                                                                                                                               <  2:323521/250‑2 (MQ=255)
                          gACTTCGCTGATGTTGGGGCCGATGGTCGCAGCCTGCGGCGGCTATATTCCGATGATCTCTGGTCGCGGCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAAcc                                                                                                                                                                                                      <  1:142713/250‑1 (MQ=255)
                          gACTTCGCTGATGTTGGGGCCGATGGTCGCAGCCTGCGGCGGCTATATTCCGATGATCTCTGGTCGCGGCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCg                                                                                                                                                                                                     <  1:252259/251‑1 (MQ=255)
                                      gTTGGGGCCGATGGTCGCAGCCTGCGGCGGCTATATTCCGATGATCTCTGGTCGCGGCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATc                                                                                                                                                                                          <  1:8671/250‑1 (MQ=255)
                                              cGATGGTCGCAGCCTGCGGCGGCTATATTCCGATGATCTCTGGTCGCGGCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATc                                                                                                                                                                                 <  1:349293/251‑1 (MQ=255)
                                                                    cTATATTCCGATGATCTCTGGTCGCGGCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAAAGTTTCTACGCGACCCGTGTTATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGGCTCTATTTTGGCga                                                                                                                                                              >  1:425267/1‑248 (MQ=255)
                                                                                   ctctGGTCGCGGCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGTTCACTGGCTCCGGCTGATAAACGTTTCTACGAGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGGAGAAACTTGCGGAAGGTc                                                                                                                                            >  1:3722/1‑251 (MQ=255)
                                                                                              gCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGCAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGTTATTCCCGCAACCGTGGACTCCCTCCCGCGGGTCACCGCCTCTATTCTGGCGATGAAACTGGCGGGAGGGCTGGAcgcggtg                                                                                                                                 >  1:97849/1‑248 (MQ=255)
                                                                                                cTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGAAGACAACCGTTTCCGCGAAATTATTAAAAACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCCCCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTggg                                                                                                                               >  1:367642/1‑250 (MQ=255)
                                                                                                   ggTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGGCTGGACGCGCTGGGGAt                                                                                                                            >  1:290559/1‑251 (MQ=255)
                                                                                                      cATACTGGCGGTACGCTCGACAAACTAGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCCGTCAGACCAACTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATAACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGaagg                                                                                                                          >  1:213759/1‑247 (MQ=255)
                                                                                                         aCTGGCGGTACGCTCGACAAACTGGAACCCATCCCGGGCTTCGACATTTCCCCGGATGACAACCGTTCCCGCGAAATTATTAAAGACGTCGGTGTGGCGTTTATCGGCCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGCCCCCACCCCTCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGt                                                                                                                      <  1:85794/251‑1 (MQ=255)
                                                                                                                gTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTg                                                                                                               >  1:63378/1‑251 (MQ=255)
                                                                                                                    gCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGTTCACTGGCTCCGGCTGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCAcc                                                                                                                                                                              >  1:66024/1‑184 (MQ=255)
                                                                                                                    gCTCGACAAACTGGAATCCAACCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGGCGGCGTGGCGATTATCGGTCAGACCAGTTCACTGGCTCCGGCTGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCAGCCCGCTGATCAcc                                                                                                                                                                              <  2:66024/184‑1 (MQ=255)
                                                                                                                                             ggttccGACATTTTCTCGGATGACACCCGTTTCCGCAAATTTAGTAAAGCCGGCGGCGTGGCGATTATCGGTCAGACCGCCCCACTGGCCCCGGCGGATAAACGTTTCTACGCGCCCCGTGATATTACCGCAACCGTGGCCTCCTTCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTAc                                                                                    <  1:232072/244‑1 (MQ=255)
                                                                                                                                                 tcgtcATTTCCCCGGATGACAACCTTTCCCGAAAAATTATTAAAGCCGTCGTCGTGGCGATTATCGGTCAGACCAGCTCACTGCCTCCGGCGGATAAACTTTTCTACGCGCCCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAct                                                                               <  1:78211/246‑1 (MQ=255)
                                                                                                                                                        tttCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTACGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGGGGCGCGTTTATGCCGACCTCCGAAatctccga                                                                         >  1:68503/1‑246 (MQ=255)
                                                                                                                                                           cccGAATGACACCGTTTTCCGCGAAATTATAAAAGGCGCGGGCGGGGCGTTTATCGGCCAGCCCAGCTCACTGTCTCCGGCGGAAAACCTTTTCTACGCGCCCCGTGATATTCCCGCAACCGTGGACTCCACCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGccc                                                                   <  1:446112/251‑1 (MQ=255)
                                                                                                                                                                           ttCCGCGAAATGATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCAGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGGGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGGCGCGGTGGTGATGGGCGTGCAAGTGGGGAGCGGCGCGGTTATGCCGATCTGCGAACTCTCTGAAGGCCATGCCGacacggttgt                                                   >  2:468943/1‑242 (MQ=255)
                                                                                                                                                                               cgcgAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGCCCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCCCCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGACGACCTACGAACTCTCTGAAGACCCTGCCGAAGCGGTTGTTgg                                               >  1:294957/1‑251 (MQ=255)
                                                                                                                                                                                 cgAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGGGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTCAGAAGTCTCTGAAGCCCTTGCCGAGACGCTTGTTGGCg                                             >  1:134121/1‑251 (MQ=255)
                                                                                                                                                                                  aaaaTTAGTAAAGACGGCGGCGTGGCGTTTAGGGGACAGACCGGCCCCTGGGCCCCGGCGAATAACCGTTTCTACGCGACCCGTGATATTACCGCAACCGGGGACTCCACCCCGCGGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTGTTGGCGt                                            <  1:328498/250‑1 (MQ=255)
                                                                                                                                                                                      ttattaAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGAACCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTCTTCAGGCGAAGAAACTGGCGGAAGGTCTGTACGCGGTGGTGATGGACGTGGAAGGGGGTAGCCGCGCGTTTATGCCGACCTACGCACTCTCTGGAGCCCTTGCCGAAGCGCTTGTTGGCGTgggt                                        >  1:62730/1‑249 (MQ=255)
                                                                                                                                                                                                       gTGGCGGTTATCGGTCAGACCAGCTCACTGGATCTGGCGGGTAAACGTTTCTATGCGACCCGTGATATTACCGCACCCGTGGACTCCCTCCAGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGCAGGTCTGGACGCGCTGGTGATGGACGAGCAAATGGGTAGCGGCGCGGTTATGCCGACCTATGAACCTCGTGAACCCCTTGCCGAGAGCATTTTTGGCGGGGCTAACGGCTCTggggagcg                       >  2:319973/1‑245 (MQ=255)
                                                                                                                                                                                                         ggCGATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGGAGGTCTGGACGCGCTGGTGATGGACGTGAAAGGGGGCAGCGGAGCGTTTATGCCGCCCTACGAACTCTCTGAAGCCCTTGCCGGAGCGATTGTTGGCGGGGCTAACGGCGCTGGCggcggcc                     >  2:427915/1‑245 (MQ=255)
                                                                                                                                                                                                            gATTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTGTTGGCGTGGCTAACGGCGCTGGCGTGCGcacc                   >  1:147039/1‑250 (MQ=255)
                                                                                                                                                                                                             aTTATCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCTCGTTTATGCCGACCTACGAACTCTCTGAAGGCCTTGCCGAAGCGATTGTTGGCGTGGCTAACGGGGCTGGCGTGCGcaccac                 >  1:275808/1‑251 (MQ=255)
                                                                                                                                                                                                                aTCGGTCAGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAACGTGGGTAGCGGCGCGTTTATGCCGACCTACGGACTCTCTGAAGCCCTTGCCGGAGCGATTGTTGGCGGGGCGAACGGGGCTGGCGTGCGCACCCCcgc              >  2:187896/1‑251 (MQ=255)
                                                                                                                                                                                                                       aGACCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATCTTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTATTGGCGTGGCTAACGGCGCTGGCGTGCGCACCACCGCGCTGCTc       >  1:406497/1‑251 (MQ=255)
                                                                                                                                                                                                                         aCCAGCTCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTGTTGGCGTGGCTAACGGCGCTGGCGTGGGCCCCACCGCGCTGCTCAc     >  1:66729/1‑251 (MQ=255)
                                                                                                                                                                                                                             gctCACTGGCTCCGGCGGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTGGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTATGAAGCCCTTGCCGAAGCGATTGTTGGCGTGGCTAACGGCGCTGGCGTGCGCACCACCGCACGGCTCACCGa  >  1:406831/3‑250 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                           
CACTCCACCGGTGGCGTCGGCGATGTGACTTCGCTGATGTTGGGGCCGATGGTCGCAGCCTGCGGCGGCTATATTCCGATGATCTCTGGTCGCGGCCTCGGTCATACTGGCGGTACGCTCGACAAACTGGAATCCATCCCTGGCTTCGACATTTTCCCGGATGACAACCGTTTCCGCGAAATTATTAAAGACGTCGGCGTGGCGATTATCGGTCAGACCAGTTCACTGGCTCCGGCTGATAAACGTTTCTACGCGACCCGTGATATTACCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTGTTGGCGTGGCTAACGGCGCTGGCGTGCGCACCACCGCGCTGCTCACCGA  >  NC_000913/4618481‑4618950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: