| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,605,791 | A→G | intergenic (‑128/‑13) | fhuF ← / → yjjZ | ferric‑siderophore reductase FhuF/DUF1435 domain‑containing protein YjjZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,605,791 | 0 | A | G | 94.3% | 92.7 / ‑2.6 | 35 | intergenic (‑128/‑13) | fhuF/yjjZ | ferric‑siderophore reductase FhuF/DUF1435 domain‑containing protein YjjZ |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (20/13); total (21/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.79e-01 | |||||||||||
GTTCACGATGTTTTGCGATCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCATAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAAAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGACGCCGATGATGCTGTATCACAAA‑CAGTTGCGGCATTACATTTTGCTACCATCGTGCCTGGCACTTATTGCTGGCATCATGCTGATGATAATGAATTTGAATCAGGG > NC_000913/4605549‑4606036 | gTTCACGATGTTTTGCGATCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATg > 1:404438/1‑250 (MQ=255) cGATGTTTTGCGATCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTACTCATAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAAAGAGATGAAATc > 2:245961/1‑250 (MQ=255) gCGATCGTCGCCCTCACGGCTTTCGCAAGCGTGGGAGCCGGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAAGTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAAc < 2:210789/251‑1 (MQ=255) aTCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTGCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGTGATTTATCTGGCTTGCAAATGATAAAAATTATCTTATGTTATTTGTTATCCTTATCAATGTGAGAGATGTAATCATGTTGCACCGt > 2:112615/1‑250 (MQ=255) cgtcgCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTAc < 1:139222/250‑1 (MQ=255) gtcgCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGCTAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGc > 2:80330/1‑251 (MQ=255) gCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCt > 2:30049/1‑251 (MQ=255) gcgcAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCATAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAAAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTggg < 1:245961/250‑1 (MQ=255) aaGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAgtg < 1:398948/251‑1 (MQ=255) tGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCATTGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCggggt > 2:372292/1‑249 (MQ=255) cGGCTGGGGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGCTTACCAGATAGCAAGTGATTTATCTGGCTTGCAAATGATAAAAATTTTCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTATGATGGGCAGTGGCTGGGGGGTGTTTCTGCCTGGATTg > 2:188358/1‑251 (MQ=255) tCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTg > 2:169419/1‑251 (MQ=255) cATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATc > 1:433244/1‑251 (MQ=255) agagCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGt < 1:372292/250‑1 (MQ=255) agagCGGGGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATCTTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTc < 2:404438/251‑1 (MQ=255) ggttcgtaactattggCCATAATCGGGATAGTAAACTAAATGATAATGAATGCTAATCCTAGCGATAGGTTTTCCCGATAGCAAGGGATTTATCGGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCACTGGCTTGGGAGTGTTGCTGCCGGGATTGCTGATTGCATGGCTGATGTATGCGGATTTATCGTCAGATc < 2:272404/237‑1 (MQ=255) aTAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGAtt < 1:224396/251‑1 (MQ=255) ggCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCCAGGGATTTATCTGGCTTGCAAATGATCAACATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAGTCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGGTGCTGAATGCGGATTTATCGTCAGATCAGTGCGGGATTGTc > 1:45611/1‑251 (MQ=255) ggATAGTAATCTAGATGATAATGATTGCTAAGCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAGATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGGCGGGATGGCGGATGGCAGGGCTGATGGATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATggg < 2:84921/251‑1 (MQ=255) tCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTAtt > 1:217276/1‑251 (MQ=255) tAAATGAAAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGGTGGGATTAGTATTg > 1:343941/1‑250 (MQ=255) gCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGACGCCGATGATGCTGt > 1:427483/1‑251 (MQ=255) aaTCCTAGCGATAGGTTTAACCGATAGCAAGGGAGTTATCTGGCTTGCAAATGATAAAAAGTATCATATGATATTGGTTATCAGTATCAATGAGAGAGATGAAATCATGTTGAAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGTGATTAGTATTGACGCCGATGATGCTGTATc < 2:263246/251‑1 (MQ=255) cctAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGACGCCGATGATGCTGTATcac < 1:80330/248‑1 (MQ=255) aGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGACGCCGATGATGCTGTATCACAAA‑CAGTTGc > 1:234572/1‑251 (MQ=255) aaGGGATTTATCTGGCTTGCAATTGATACAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGAAGTGGCTGGGGAGTGTTGCTGCCGGGATTGATGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGGTTGTACTTCTGAGGGGGTTCGTATTGAGACCGTTGGTGCTGTATCACAAAACA‑TTGCGGCAATACATTTTGCt > 2:481009/1‑251 (MQ=255) aaGGGATTTATCTGGCTTGCAAATGATAATAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGACGCCGATGATGCTGTCTCACAAA‑CAGTTGCGGCATTACATTTTGCt > 1:391711/1‑251 (MQ=255) gCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGATGCCGGGGTTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCCTTATGATGGGATTAGTATTTACCCCAATGATGCTGTATCACAAA‑CAGTTGCGGCTATACATTTTGCTACCATCGTGCCTTGCACt > 2:443098/1‑251 (MQ=255) gATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAAGCATGTTGCAACGTACGCTGGGCAGTGGCGGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGACGCCGATGATGCTGTATCACAAA‑CAGTTGCGGCATTACATTTTGCTACCATCGTGCCTGGCACTTATTg < 2:212321/250‑1 (MQ=255) aaaTTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGACGCCGATGATGCTGTATCACAAA‑CAGTTGCGGCATTACATTTTGCTACCATCGTGCCTGGCACTTATTGCTGGc > 1:355036/1‑250 (MQ=255) aTCATATGGTATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCCGATTGCAGGGATGATGTATGCGGATTTATCGTCAGATAAGTGGCGGATTGTCATTCTGATGGGGTTAGTATTGCCGCCGGAGAGGCTGTATCACACA‑CAGATGCGGCATTGAATTTTGCTACCCTCGTGGCTGGCACTTTTTGCTGGcgcaatg > 2:84641/1‑245 (MQ=255) ttGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCCTTCTGATGGGATTAGTATTGACGCCGATGATGCTGGATCACAAA‑CAGTTGCGGCATTACATTTTGCTACCATCGGGCCTGGGCCTTTTTGTTTGCATCATGCTTATGATaa > 2:311084/1‑250 (MQ=255) tgggtagcataatcaAGGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGTCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGTATTAGTATTGACGCCTATGATGCTGTATCACAAA‑CAGTTGCGGCATGACATTTTGCTACCATCGTGACTGGCACTGATTGCTGGCTTCATGCTGATGATAAt < 2:71047/239‑1 (MQ=255) caATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGACGCCGATGATGCTGTATCACAAA‑CAGTTGCGGCATTACATTTTGCTACCATCGTGCCTGGCACTTATTGCTGGCATCATGCTGATGATAATGAATTTGAATCAg < 1:169419/250‑1 (MQ=255) aaTGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCCTTCTGATGGGGTTAGTATTGACGCCGATGATGCTGTATCACAAA‑CAGTTGCGGCATTACATTTTGCTACCATAGTGCCAGGCCCTTTTTGCTGGCATCATGCTGTTGATAATGAATTTGAATCCggg > 2:384687/1‑251 (MQ=255) | GTTCACGATGTTTTGCGATCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCATAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAAAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGACGCCGATGATGCTGTATCACAAA‑CAGTTGCGGCATTACATTTTGCTACCATCGTGCCTGGCACTTATTGCTGGCATCATGCTGATGATAATGAATTTGAATCAGGG > NC_000913/4605549‑4606036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |