| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,546,272 | A→C | T393P (ACC→CCC) | fimD → | type I fimbriae usher protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,546,272 | 0 | A | C | 94.3% | 144.5 / ‑5.3 | 53 | T393P (ACC→CCC) | fimD | type I fimbriae usher protein |
| Reads supporting (aligned to +/- strand): ref base A (3/0); new base C (27/23); total (30/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAAACAAAATGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAATCAGGCACGAATATTCAGTT > NC_000913/4546034‑4546522 | tAAACAAAATGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTCACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAATGGAAATGCCCAGCAGGAAAAACCCCCCTTTTTcc > 2:60421/1‑251 (MQ=255) aaaCAAAATGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTcc > 1:79589/1‑250 (MQ=255) aaaaTGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAAAGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTCACGATCAAAGAGGCTGACGACAGCACGAAGATTTTTACCGTACCCTATTCGTCCGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGAAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGt > 1:306477/1‑251 (MQ=255) tGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGTAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAATGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTACAG‑GGTACATTTCTcc > 2:212471/1‑251 (MQ=255) tataATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCt > 1:328152/1‑251 (MQ=255) aGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGTGAATACCGTAGGGGAAATGCGCAGCAGGAAAAACCCCCCTTTTTCCAG‑AGGAAATTACTCCACCGCCTTCCggc > 2:55259/1‑251 (MQ=255) gCCACCGGGGCCTTTTCCCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATAACGTAGTGGCAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGctggctggg > 1:354686/1‑250 (MQ=255) gCCACCGGGGCCTTTTACCATCAACGATAACTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑a < 1:494391/251‑1 (MQ=255) gccGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGGGAATACCGAAGTGGAAATGCGCAGCAGGGAAAACCCCGCATTTTCCAG‑AGTACATTACTCCACGTCCTTCCggcgtgccgtgaa > 2:293082/2‑240 (MQ=255) cGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGCGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAat > 1:454719/1‑250 (MQ=255) cGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTCGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTAACGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGCAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGACCTCCGGCTGCATGG‑ACact > 1:23552/1‑248 (MQ=255) ccTTTTTCCATCAACGATATCTATGCCGCAGGTAAGATTGGTGACTGGCAGGTAACGAGCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTGTCCAG‑AGTACATTACGCCACGGCCTTCCGGCTGGCTGG‑ACAATATAtgg < 2:475145/251‑1 (MQ=255) gttttccagcAACGATATCTAGGCCGCAGGTAATAGTGTGGATTTTCAGGTATCGATCAAAGAGGCTGACGGCAGCACGCATATTTTTACCGTTCCCTAATCGTCAGTCCCGCTTTTGCAACGTTAAGGGCATACTCGTTATTCCATGACGGCAGGAGAATACCGTATTGGATATGCGCAGCCGGAAAATCCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCGGGCTGG‑CCAAGATAtgctc < 2:280508/242‑4 (MQ=255) ttACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATAtggtgg < 2:454719/250‑1 (MQ=255) aCCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAAc > 1:291445/1‑251 (MQ=255) cATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAACGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGATTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑GCAATATATGGTGGCACGc > 1:313073/1‑251 (MQ=255) tCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGAAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGAAGCAGGAAAAAACCCGCTTTTTCCAG‑AGTACATTACTCAACGGCCTTCCGGCTGGCTGGGACA‑TATATGGTGGAACGCa > 1:337118/1‑250 (MQ=255) cGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTgg < 1:276331/251‑1 (MQ=255) aTGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGAt < 1:55259/248‑1 (MQ=255) gCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATCTATTGTGGAACGCAACTAGCGGATCGtt > 1:456234/1‑250 (MQ=255) aGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCCGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGGGGAACGCACCTGGCGGATCGTTAACGGGCTTTTa > 1:472900/1‑250 (MQ=255) ggtgACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAAtg < 2:40447/250‑2 (MQ=255) tgACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCCACTGGCGGCTCGTTATCGTGCTTTTAATTT‑Cg > 1:78747/1‑251 (MQ=255) tgACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATAACGTAGTGGGAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAA‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑GCAATATTTGGGGGAACGCAACTGGCGGGTTGGTTTCGGGCTTTTTATTT‑Cg > 2:157217/1‑251 (MQ=255) aCTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCAAGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGt > 1:434317/1‑251 (MQ=255) aCTTGCAGGTAACGATCAAAGAGGCGGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATAGGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGt < 2:152291/251‑1 (MQ=255) tGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTAACCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTa < 2:154859/249‑1 (MQ=255) aaCGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGaaa > 1:123595/1‑250 (MQ=255) gagGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGGGAATACCCTATTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑GGTACATTACTCAACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGGACGCCACTGGCGGGTCGTTATTGTGCTTTTAATTT‑TCGTTTCGGGGAAAACATtggggg > 2:384450/1‑250 (MQ=255) gggCTGACGGCTGCACGCAGATTTTTTCCGTGACCTATTCGTCAGTCCCTCTGTTGCAACGTGAAGGGCATAATCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCGGCAGGAAAAACCCCGCTTGTTCCAG‑AGTACATTACTACTCGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGTTATCGCGAAAACCATGGGGGCa < 2:404617/250‑1 (MQ=255) tGACGGCAGCACGCAGCTTTTTACCGTACCCTATTCGTCCGTCCCGCTTTTGCAACGTGAGGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑CATACATTACTCCACGGCCTTCCGGCTGGCTTT‑ACCATATATGGTGGAACGCCACTGGCGTGTCGTTATCGTGCTTTTAATTT‑CATTATCGGGAAAAACATggggcacctgg > 1:447645/1‑244 (MQ=255) ccGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGgc < 2:291445/250‑1 (MQ=255) ccGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGAGCGTTATCGTGCTTTTAATTG‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCtctgtc < 2:457380/250‑1 (MQ=255) aCCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAg < 1:383332/250‑1 (MQ=255) tATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCCGGAGAATACCGTAGTGGAAAAGCGCAGCCGGAAAAACCCCCCTTTTTCCAG‑AGTACATTAATCCACCGCCTTACTGCTGGCTGG‑AACATATATGGTGGCACGCAACTTGCGGCTCGTTATCGTTCTTTTAATTTTCGG‑ATCGGGAAAAACTTGGGGGCAATGGGCGctgagtcgagcgaacgtcggtgggggg > 2:279424/1‑225 (MQ=255) tATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTAGCGGGAAAAACATGGGGGCACTGGGCGct < 1:279424/225‑1 (MQ=255) tCGTCAGGCCCGCTTTTGCAACGAGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAACACCCTCTTTTTCCAG‑AGTAAATTACTCCACGGCCTTCCGGCTGGCTGG‑CCCATTTATTGGGGAGCGCAACAGGAGGGGTGGTATCGTGCTTTTACTTT‑CTGGGTCGGGGACAACATGGAGGCACATGGCGCTCTGTCTGTGGGTCTGACGCAAGCGAAttt > 2:373533/1‑250 (MQ=255) gTCAGTCCCGCGTGTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGAGCGTTATCGTGCTTTTAATTT‑CGGGATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCca < 2:456234/251‑1 (MQ=255) aGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGGACGTTATCGTGCTTTTAATTT‑CGGGATCGGGTAAAACCTGGGGGCACTGGGCGCTCTGTCTGTGGGTATGGAGCAGGCTAATTCCacac > 2:445028/1‑251 (MQ=255) gTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACt < 1:445028/251‑1 (MQ=255) tCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACtt > 1:309651/1‑251 (MQ=255) ccATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCg < 1:157217/250‑1 (MQ=255) aTTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCCCGGCCTTCCGGCTGGCTGG‑GCAATATATGGTGGGACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTAACGGGAAAAACATGGGGGCACCGGGCGCTCTTTCTGTGGGTATGACGCAGGACAATTTCACACTTTCCCATGACAGTCCGCATGAAGGGCAATCCGGGCGttt > 2:205324/1‑251 (MQ=255) cGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCAAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGCTGCCAGTCAGCATGACGGACAATAGGTGCGTTTtctc > 2:321837/1‑251 (MQ=255) aGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCtata < 1:412833/251‑1 (MQ=255) ggAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCAGCACGTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCtata > 1:146021/1‑250 (MQ=255) agaATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCca > 2:34832/1‑197 (MQ=255) agaATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCca < 1:34832/197‑1 (MQ=255) aaTACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCAACGGCCTTCCGGCTGGCTGG‑CCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAACACAAGGGGGCACTGGGCGCTCTGTCTGTGGTTATTACGCAGGCTAATTCCACACTTCCCGGTGACAGTAAGCATGACGGAAAAACGGAGCGttttatttatacaaa > 2:274210/1‑239 (MQ=255) aTACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCTATAACAAAt < 1:306664/251‑1 (MQ=255) aCCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCTATAACAAATc < 2:79589/250‑1 (MQ=255) gtgaaaagcgacgcagGAAAAACCCCGCTTTTTACAGGAG‑ACATTACGCCACGGCCTGCCGGCTGGCTGG‑TAAATTGATGGTGTAACGCAACTGGGGGAGCGGTATCGTGCTTTGAATTT‑CGGTAACGGGTAAAACATGGGGGCACTGGGAGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCTTTTTTTCTATAACAAATCGCTCAATg < 2:447645/239‑1 (MQ=255) aaaTGCGCAGCAGGAAAAACCCCTCTTATTCCAG‑AGTACATTACCCCGCGGCCTTCCGGCTGGTTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCGAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAAt < 2:339935/251‑1 (MQ=255) aCCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAATCAGGCACGAATATTCAGtt > 2:213827/1‑251 (MQ=255) | TAAACAAAATGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAG‑AGTACATTACTCCACGGCCTTCCGGCTGGCTGG‑ACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTT‑CGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAATCAGGCACGAATATTCAGTT > NC_000913/4546034‑4546522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |