| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,492,470 | C→A | G19V (GGC→GTC) | idnT ← | L‑idonate/5‑ketogluconate/gluconate transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,492,470 | 0 | C | A | 92.6% | 72.5 / ‑5.5 | 27 | G19V (GGC→GTC) | idnT | L‑idonate/5‑ketogluconate/gluconate transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base A (16/9); total (16/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTGCACGCGTTTTTTACCAAAAGTAGCAATCAGCGTAGTGGCGATACGTTGTGCCGCACCCGTATCAGAAATCAGCTTGCCTAACATGGCCCCGAAACCGAGGATCATTGCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGCCGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGG‑CTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATCAGTTCCTGCGGATCTC > NC_000913/4492231‑4492696 | agtGCACGCGTTTTTTACAAAAAGTAGCAATCAGCGGAGTGGCGATACGTTGTGCCGCACCCGTATCAGAAAGCAGCTTGCCTAACATGGCCCCGAAACCGAGGATCATTGCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAgg < 2:484487/249‑1 (MQ=255) tttttgttACCAAAAGTATCAAGCTGCGTAGGGCCCAAACGTTGTCCCGCACCCGTATCAGAAACCAGCCTGCATAACATGGCCCAGAAACCGATGATCATTGCCAGCCCGCCGAGCGTGCTCCCGATACCATTTGGTATAGAGTGCAGGACGGACTGGGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCGACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATaagaa < 2:469049/244‑1 (MQ=255) ttttACCAAAAGTAGCAATCAGCGTAGTGGCGATACGTTGTGCCGCACCCGTATCAGCAATCAGCTTGCCTAACATGGCCCCGAAACCGAGGATCATTGCCAGCCCGCCGAGCGTGCTGCCGAAACCATTTTGTATAGAGTGCAGGACGGCCTGTGAATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAACGCCGTTACCTTTAAAGACGAACATCAGGATAAGAaccagc > 2:291395/1‑251 (MQ=255) tttaaccaaaataaacaatccacGTAGTGAAGATACTTGGTGCCCCTCCCGTCTCAGAAATCAACTGGCCTACCATGCCCCCGAACCTGAGGATCCTTGCCAGCCCGCCGCGCGTGCTGCCGATACCATTTTGCATAGAGTGCAGGACTGCCTGTGCATCCATCCCTTCGGCAAATCCGACTACGGCCGCTACCAGAACAAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAagcag < 2:156370/228‑1 (MQ=255) aGCGTAGTGGCGATACGTTGTGCCGCACCCGTATCAGAACTCAGCTTGCCTAACATGGCCCCGAAACCGAGGATCATTGCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTAAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGAGACGCCTGCCGCaataat > 1:171315/1‑251 (MQ=255) gTAGTGGCGATACGTTGTGACGCACCCGTATCAGAAATCAGCTTGCCTAACATGGCCCCGAAACCGAGGATCATGGCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGCGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAACTCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAACACGACGCCGGCCGCAATAATGAt > 2:63061/1‑251 (MQ=255) gaagcttttggccgccCCCGTATCAAAAACCACCCTGCTAAACATGGCCCCGAAACCGAGGATCATTGCCAGCCCGCCGAGCGGGCGGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCa < 2:48631/241‑1 (MQ=255) gTTGTGCCGCACCCGTATCAGAAATCAGCTTGCCTAACATAGCCCCGAAACCGAGGATCATTGCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTc > 1:179062/1‑251 (MQ=255) tgcggCACCCGTATCAGAAATCAGCTTGCCTAACATGGCCCCGAAACCGAGGATCATTGCCAGCCCGCCGAGCGTGCTGCCGATACCCTTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCACTTAGGCAAATCAGACGACGGCAGCTACCAGTACGAGGGCAATAAAGCCGTCAACTTTAAAGACGATCATACGGATAAGAGACAGCGCAACGCCTACCGCAATAATGGTTAATGGCATAGTCttt > 2:28609/5‑250 (MQ=255) aTCAGCTTGCCTAACATGGCCCCGAAACCGAGGATCATTGCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGa > 1:459084/1‑250 (MQ=255) gggCCCCAAAACCGAGGATCATTGCCAGCCCGCCGGGCGTGCTGACGATACCATTTTGGATAGAGGGCAGGACTGCCTGTTCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTGTcgcg < 2:454301/250‑1 (MQ=255) ccccGAAACCGAGGATCATTGCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGAATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTg > 1:48550/1‑251 (MQ=255) ccGAGGATCATTGCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑gg > 1:92170/1‑251 (MQ=255) cATTGCCGGCCCGACGGGGGTGCTGCCGATTCAAGTGTGTATAGAGTGCAGGACGGCCTGTGCATCCAACCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑gggggggct < 2:328255/250‑4 (MQ=255) ttgccaccccgcagcgagtactgacGATACCTTGTTGTATAGAGATCAGGACGGCCTGTGAACCAATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCTTTATCTTTAAAGCCGATCATCAGGATAAGAAGCATCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGTGGG‑CTGtt < 2:155394/226‑1 (MQ=255) aGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCCTCAGGATAAGCAGCAGCGCGACGCCTGCCGCAATAATg > 2:281771/1‑171 (MQ=255) aGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATg < 1:281771/171‑1 (MQ=255) aGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGGGCTGTTAAAc > 2:84439/1‑250 (MQ=255) ccgAGCGTGCTGCCGATACCATTTTGAATAGAGTGCAGGACGCCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGACAGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGACTGTATCTCTTATTAGGGCCAGAAAAGCAGCGCTTTCGCGCTGAGCGTA‑ggggggggtgtgaaacagacact > 2:144674/1‑234 (MQ=255) tGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGGGCTGTTAAACAGCCACTACCATGCCGCCATCAACAaacaac > 2:192495/1‑251 (MQ=255) cAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGtt > 1:210547/1‑251 (MQ=255) tgtgCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGAAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACTCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATc < 1:473351/250‑1 (MQ=255) aaaTCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGa > 1:393765/1‑250 (MQ=255) atcccacaacgGCAGCCCCCAGAACGAGTGCAAAAAAGCCGTGAACTTTAAAGACGATAATCAGGATAAGAAGCAGGGCTGCGCCTTCCGCAATAATGAGTAAGGGTATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGGGCTGTTAAACAACCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGTAAGGcaca < 2:54676/243‑1 (MQ=255) aCCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATCAGt > 2:180806/1‑251 (MQ=255) aaCGAGGGCAATAAAGCCGTTATCTTTAAAACAGAACATCAGGAAAAAAAGCAGCGCGCCGCCTGCCTCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTATGGGGGG‑CTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATCAGTTCCTg < 1:279154/251‑1 (MQ=255) cAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATACGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGCACACCGCAGCACCACTCAGTTCCTGCGGAtctc > 1:278002/1‑251 (MQ=255) | ATTGCACGCGTTTTTTACCAAAAGTAGCAATCAGCGTAGTGGCGATACGTTGTGCCGCACCCGTATCAGAAATCAGCTTGCCTAACATGGCCCCGAAACCGAGGATCATTGCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGCCGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGG‑CTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATCAGTTCCTGCGGATCTC > NC_000913/4492231‑4492696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |