Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,500,129 G→A G74S (GGC→AGC)  frlA → fructoselysine/psicoselysine transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,500,1290GA91.2% 82.6 / ‑0.3 34G74S (GGC→AGC) frlAfructoselysine/psicoselysine transporter
Reads supporting (aligned to +/- strand):  ref base G (2/1);  new base A (10/21);  total (12/22)
Fisher's exact test for biased strand distribution p-value = 2.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.31e-01

CGCTATGGGAAGCCAGGAACTCCAACGCAAGCTCGGATTTTGGGCCGTTCTTGCAATCGCCGTCGGGACAACCGTCGGCTCCGGTATTTTTGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATGGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCGCCGCCGGATTAATTATCGCCTTTATGTTGCTACACCTGCGCTCCGTTGAAGGCGGCGCAGCGTTTCAGACGCTAATT  >  NC_000913/3499906‑3500377
                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                         
cGCTATGGGAAGCCAGGAACTCCAACGCAAGCTCGGATTTTGGGCCGTTCTTGCAATCGCCGTCGGGACAACCGTCGGCTCCGGTATTTTTGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGGTTGTCATTGGCGGGGTAATTTTGATACCGCCAATGTGCGGCTATTCGGGACTATCCCCCCCCTTTCCGGGAAAAAGAGCAGATTATGTTTAtttttaaaat                                                                                                                                                                                                                                >  1:456082/1‑241 (MQ=255)
            ccAGGAACTCCAACGCAAGCTCGGATTTTGGGCCGTTCTTGCAATCGCCGTCGGGACAACCGTCGGCTCCGGTATTTTTGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGGCTATGCGGGACTATACACCGCCTTTCCGGAAAATATCGCCGATTATTTTTATCTGAAAAATGCCGGAAGCCGAc                                                                                                                                                                                                                   >  1:245089/1‑251 (MQ=255)
               ggAACTCCAACGCAAGCTCGGATTTTGGGCCGTTCTTGCAATCGCCGTCGGGACAACCGTCGGCTCCGGTATTTTTGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTGATTTTGGTCCCCCCAATGTGGGTCTTTGCGGGACTATTCCCCCCTTTTCCAGGAAAAAGCGGCGATTTTGTTTTTCTGTAAAATGCCGGGAACCGAcccc                                                                                                                                                                                                                >  1:123885/1‑249 (MQ=255)
                             agcccGGATTTTGGGCCGGTCTTGCAATCGCCGGCGGGACAACCGTCGGCTCCGGTATTTTTGTATCTGTGGGGGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTcc                                                                                                                                                                                                  <  2:492906/247‑1 (MQ=255)
                                    gttttGGTCCTTTCTGGCAATCTCCGCCGGGAAAACCGTCGTATCCGGAATTTTTGTATCTGTGGGTGAAGGTGCAAAAGCAGCGGGCTCGCCGTGGCTTACGGTGCTCGTGTTTGGCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCTGAACTATCCACCGCTTAGCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCTACCGCTGGCTTTCCTCTCCGGCTggg                                                                                                                                                                                           <  2:119656/250‑1 (MQ=255)
                                         gggCCGTTCTTGCAATCGCCGTCGGGACAACCGTCGGCTCCGGTATTTTTGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAg                                                                                                                                                                                       <  1:342761/250‑1 (MQ=255)
                                              gTTCTTTCAATCGCCGTCGGGACACCCGTCGGTTCCGGTATTTTTGTATCTGGTGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTg                                                                                                                                                                                 <  1:374876/251‑1 (MQ=255)
                                              gTTCTTGCAATCGCCGTCGGGACAACCGTCGGCTCCGGTATTTTTGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGGTTATTTTGTTCCCGCCAAAGTGGGGCTATGCGGGTCTCTCCGCCGCTTTTCCGGAAAATAGCGCGAGTTTTGTTTTTCTGTAAAATACCCGGAGCCCGCCCCCCGCTTTTCTCTCCGCCTTGGCCAGCTTccg                                                                                                                                                                                 >  2:135164/1‑249 (MQ=255)
                                                          gCCGTCGGGACAACCGTCGGCTCCGGTATTTTTGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATgc                                                                                                                                                                     <  1:82271/251‑1 (MQ=255)
                                                            cGTCGGGACAACCGTCGGCTCCGGTATTTTTGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGGTAATTTTGATCCCCCAAATGTGGGTCTATGCGGGAATATTCCCCGCTTATTCGGCAAATAGCGCCGATTATGTTTATCTTAAAAATGCCGGGAGCCGAACCCCGGCTTTTCTCCCCGGCGGGGCCGGGGTCTGGGCCCACGaaacgc                                                                                                                                                                   >  1:327185/1‑246 (MQ=255)
                                                                             gCTCCGTTATTTTTGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGCCCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATg                                                                                                                                                  <  2:123574/251‑1 (MQ=255)
                                                                                  ggTATTTTTGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGGTAAATGTGTGTCCGCAAATGTGCGGCTATGTGGGACTATCCCCCCCCTTTTCGGGAAAAAGCGGCGGATTTTTTTTTTTTGAAAATGACGGAAGCCGGACGCTGGCGTTCCTCTCCCGCTGGGCCAGCATCCGGGCCAACGCTGCGCCGTCCTTTTCGGTTTTGgcgcg                                                                                                                                             >  2:217414/1‑250 (MQ=255)
                                                                                       ttttGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCg                                                                                                                                         <  1:201595/250‑1 (MQ=255)
                                                                                       ttgtGTATCTGTGGGGGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCg                                                                                                                                         <  2:123885/247‑1 (MQ=255)
                                                                                          tGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGAtt                                                                                                                                      <  2:327185/250‑1 (MQ=255)
                                                                                           gTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGt                                                                                                                                    <  1:217414/251‑1 (MQ=255)
                                                                                           gTATCTGGGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGGGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGAGGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGt                                                                                                                                    <  2:212525/251‑1 (MQ=255)
                                                                                                                        gggCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCg                                                                                                       <  1:212769/251‑1 (MQ=255)
                                                                                                                          gCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGAt                                                                                                     <  1:310454/251‑1 (MQ=255)
                                                                                                                                cGTGGCTTTCGGGGCTCGCGTTTGGCATTGGCGTGGTAAGTTTGAGCCCGCAAATGTGAGTCTAGGCGGAACTACGCACCGCTTAGCCGGAAAAGAGCGCAGATTATGTTTATATGAAAAATGCCGGAAGCCGCCCGCTGGCTTTCCTCTCCGGCGGGGCCAGGTTCTGGGCCAACGATGCGCCGTTATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCTTATCGATCCGTTg                                                                                               <  2:374102/251‑1 (MQ=255)
                                                                                                                                                cgcgTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCGCCGCTTATCCGGAAAATGGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGTCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATcg                                                                               <  1:135164/251‑1 (MQ=255)
                                                                                                                                                                              cccGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCGCCGCCGGATTAATTATCGCCTTTATGTTGc                                                 >  1:447332/1‑251 (MQ=255)
                                                                                                                                                                                   aaaTGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCGCCGCCGGATTAATTATCGCCTTTATGTTGCTacac                                            <  1:67077/251‑1 (MQ=255)
                                                                                                                                                                                       gtgCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGAGGCGCCGTCCTTGTCGGTTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCGCCGCCGGATTACTTATCGCCTTTATGTTGCTACACCTgc                                        >  2:340926/1‑251 (MQ=255)
                                                                                                                                                                                             cgttGCGGAACTATCCCCCCCTTATCCGGAAAATAGCGCAGATTTTGTTTCACTGAAAAATGACGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTTGTCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCGCCGCCGGATTAATTATCGCCTTTATGTTGCTACACCAGCGCTCCg                                  <  2:283988/248‑1 (MQ=255)
                                                                                                                                                                                               atgcgaagctgtacacagCTTATCCGGTAAGTAGCGCAGATTATGTTTATCTGAACAGTGCCGCAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGCTGCGCCGACATTGTCGATTATGGCGCTGGCGATTGGCGACAATCTTGGCTTTTTAATGCCTATCGACCCGTTGGTCGGTAGATTTATCGCCACCGGATTAATTATCGCCTTTTTTTTTCTCCCCCTCCGCTCCGtt                                >  2:217895/18‑251 (MQ=255)
                                                                                                                                                                                               aTGCGGAACTATCCACCGCTTATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCGCCGCCGGATTAATTATCGCCTTTATGTTGCTACACCTGCGCTCCGtt                                <  1:246832/251‑1 (MQ=255)
                                                                                                                                                                                                    gAACTATCCACTGCTTATCCGGAAAATAGCGCAGATTATGTTTTGCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCGCCGCCGGATTAATTATCGCCTTTATGTTGCTACACCTGCGCTCCGTTGAAgg                           <  1:340056/251‑1 (MQ=255)
                                                                                                                                                                                                       actgacctccggtgaTCCGGAAAAGAGCGCAGTTTATGTTTATATGAAAAATGCCGGAAGCCGTCCGCTGGCTTTCACCTCCGGCTGGGCCAGCGTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCTCCGCCGGATTAATTATCGCCTGTATGTTGCTACACCTGCGCTCCGTTGAAggcg                         <  2:197515/237‑1 (MQ=255)
                                                                                                                                                                                                                   ttATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATcgc                                                                              <  1:92287/186‑1 (MQ=255)
                                                                                                                                                                                                                   ttATCCGGAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATcgc                                                                              >  2:92287/1‑186 (MQ=255)
                                                                                                                                                                                                                       ccGGACAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCCACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCGCCGCCGGATTAATTATCGCCTTTATGTTGCTACACCTGCGCTCCGTTGAAGGCGGCGCAGCGTTTCAGAc         >  2:331858/1‑251 (MQ=255)
                                                                                                                                                                                                                           gAAAATAGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCGCCGCCGGATTAATTAGCGCCTTTATGTTGCTACACCTGCGCTCCGTTGAAGGCGGCGCAGCGTTTCAGACGCt      <  1:249796/251‑1 (MQ=255)
                                                                                                                                                                                                                               aTGGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCGCCGCCGGATTAATTATCGCCTTTATGTTGCTACACCTGCGCTCCGTTGAAGGCGGCGCAGCGTTTCAGACGCTAAtt  >  1:77725/1‑251 (MQ=255)
                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                         
CGCTATGGGAAGCCAGGAACTCCAACGCAAGCTCGGATTTTGGGCCGTTCTTGCAATCGCCGTCGGGACAACCGTCGGCTCCGGTATTTTTGTATCTGTGGGTGAAGTGGCAAAAGCAGCGGGCACGCCGTGGCTTACGGTGCTCGCGTTTGTCATTGGCGGGTTAATTGTGATCCCGCAAATGTGCGTCTATGCGGAACTATCCACCGCTTATCCGGAAAATGGCGCAGATTATGTTTATCTGAAAAATGCCGGAAGCCGACCGCTGGCTTTCCTCTCCGGCTGGGCCAGCTTCTGGGCCAACGATGCGCCGTCATTGTCGATTATGGCGCTGGCGATTGTCAGCAATCTTGGCTTTTTAACGCCTATCGATCCGTTGCTCGGTAAATTTATCGCCGCCGGATTAATTATCGCCTTTATGTTGCTACACCTGCGCTCCGTTGAAGGCGGCGCAGCGTTTCAGACGCTAATT  >  NC_000913/3499906‑3500377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: