| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,411,689 | G→T | E13* (GAA→TAA) | yhdJ → | DNA adenine methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,411,689 | 0 | G | T | 94.6% | 99.1 / ‑6.0 | 38 | E13* (GAA→TAA) | yhdJ | DNA adenine methyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); major base T (20/15); minor base A (0/2); total (20/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCCCCTGTTGGACATGGTGATGCAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAAAAGCAGGGCAGCATGTACATCATGAACAGTACGGAAAACATGCCCTTT > NC_000913/3411449‑3411931 | aGCCCCTGGTGGACATGGTGATGCAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGAc < 2:452069/251‑1 (MQ=255) gTTGGACATGGTGATGCAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAA‑TTCAGGTTAGATAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCattatt > 1:72207/1‑251 (MQ=255) gccaTACACCCTGGGTAACCAGACCCGTGCTGCGCTGATGATGTGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTGTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATCCACGGTGATGCGCt < 2:177896/247‑1 (MQ=255) gCAATACACCCGTGGTAACCAGACCCATGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGAGCtt > 1:431487/1‑251 (MQ=255) acCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAACATTGAAAAAATACGGCATGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGaa > 2:503375/1‑250 (MQ=255) cGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCccgccg > 1:208153/1‑251 (MQ=255) gctgcGCTGATGATGGGCATCAACCGTGGTACGAAGCGTAAAAAATTGAAAAAATACGGCATGAACTAA‑TTCAGTTTAGCAAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCTTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGCCCCGGTTTGGTAATTAAGCTAAGACCATTATTCCCGGTGATGCGTTTGCCGAACTTAAAAAGACCCCCGCCGaaa < 1:464865/251‑1 (MQ=255) ggggcacaaaacGTGGTACGCTGCATAAAAAATTGAAAAAATACGGCATGAAATAA‑TTCAGGTTAGCTAAATGCTGGATTAAAAAGGTGCTACGCGTCATGGGGAAGCTCCTTTTTTATAGGTGTCACAAAGGGAGTGACCAGGAAAACAGGATGTGACCCGCCCCGTTTTGGTAATTAAGATAAGACCATTATTCATGGTGATGCGTTTGCAGAACTTAAAAAGATCCCCGCCGAAAGTGTCgatctgat < 2:396489/240‑1 (MQ=255) cAACCGTGGTAGGCTGCTTAAAAAATTGAAAAAATTCGGCATGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGTTTTGGTAATTAAGCTAAGACCATTATTCTCGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGc < 1:348582/250‑1 (MQ=255) ggTACGCTGCGTAAAAAATTGAAAAAATACGGAATGAACTAA‑GTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCTTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGTTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGTCcca < 2:151543/250‑1 (MQ=255) cGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTa < 1:127384/166‑1 (MQ=255) cGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTa > 2:127384/1‑166 (MQ=255) aaaaaTGGAAAAAATACGGCA‑GGACTAAATACAGGTAAGTAAAAGGCTGGATAAAAAAGGCGGTACTCGGCTTGGGGAAGCGCCTTTTTTATAGGGGTCACAAAGGGAGTGACCATGAGAACAGGAGGTGAACCGACCCGGTTGGGTAATTAAGATAAGCCCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCgg < 2:80429/251‑1 (MQ=255) aaTTGAAAAAATACGGCATGAACTAA‑TTAAAGTTAGCTAAATGCTTGATTAAAAAAGCGCTACTCGGCATGGGTAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACCGGATGGGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGACATTAAAAAGATCCCAGCCGCAATTGGCGATATGATCTTTGCCGACCCACCATATAAAATCGGTa > 2:296462/1‑250 (MQ=255) gaagaaaTACGGCCTGAACTAA‑TTCCTGTTAGCTAAATGCTTGATTAAAAAGGCGCTAATCGACATGCGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACACTGAGAACAGGATGTGAACCGACCCGGTTTGGAAATTAAGATAAGACCCTTATTCACGGTGATGCGCTTGCCGAACTTAACAATATCCCCGCCGAACGAGTCGATCTGTTCTTTGCCGCCCCACCATATACCATCGATAAAAAt > 2:61995/5‑251 (MQ=255) aaaaTCCGGCATGAACTGA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTCATCGGCATGGGGAAACGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGGAATTAAGCTAAGAACATTCTTCACGGTGATGCGCTTGCCGAACTTAAAAAGAACCCCGCCGAAAGCGTGGATCTGATCTTTGCCGACCAACCATAAAACATAGGTAAAAAtttt > 2:463477/1‑251 (MQ=255) aaaaTACGGCATGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAAtttt > 1:438846/1‑251 (MQ=255) ggCATGAACTAA‑TCCAGGTTAGCTAAAGGCTTGATTAAAAAGGCGCTACGCGGCATGGGGAAGCGCTTTTTTTATAGGTGTCACAAAGGGGGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGTTAATTAAGCTAAGACCATTATTCTCGGTGATGCGTTTGCCAAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTc < 1:460186/251‑1 (MQ=255) aTGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGCTCTGATCTTTGCCGACCCACCATATAACATCGGTAAAACTTTTGATGGTCTg > 2:176762/1‑250 (MQ=255) aaCTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACCTCGGTAAAAATTTTGATGGTCTGATCg > 1:257855/1‑251 (MQ=255) ggTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATTTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCAc < 1:384529/138‑1 (MQ=255) ggTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCAc > 2:384529/1‑138 (MQ=255) gtttgCTAAATTCTTGATTAAAAAGGCGCTACTGGGCATGGGGAAGCGCCTTTTTTATAGGTGTAACAAAGGATGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGCCCATTATTCGCGGTGATGCGCTTGCCGAATTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGGCTGATCGAAGCCTGGaaa < 2:73221/247‑1 (MQ=255) gTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACt < 2:29292/157‑1 (MQ=255) gTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACt > 1:29292/1‑157 (MQ=255) ttGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGttt > 2:389538/1‑250 (MQ=255) aCTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGa > 1:164836/1‑250 (MQ=255) aaaggtgtacaaaaGGGAGTGACAAAGAGAAAAGGAGGTGAACCGATCCGGTTTGGTAATAAAACTAAGACCATTATTCACGGTGATGCCCTTGCCAAACTAAAAAAAATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTcg < 2:422436/240‑2 (MQ=255) aaggggtaaaaaaGGGATTGACCATGAGAACAGGTTGTGAACCGCCCCGGTTTGGTAATAAAGCAAAGCCCATTATTCACGGTGATGCGCTTGCCGAATTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTg < 2:208153/241‑1 (MQ=255) gtgtCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGGAATTAAGCTAAGACCATTATTCACGGTGCTGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGGTTGCAGAGTTCCACCGCGTTCTGaa > 2:124912/1‑250 (MQ=255) gggagggacaaggagaAAAGGATGGGAACCGACCCGGTTTGGAAATTAAGCAAAGACCATTATTCACGGTGAGGCGCTGGCCGAACTAAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAAAAGCAGGgca < 1:124912/239‑1 (MQ=255) gACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAAAAGCAGGGCAGCATGt > 1:413669/1‑251 (MQ=255) gaACAGGATGTGAACCAACCCGGTTTGGTACTTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTCAAACTTTTGATGGTCTGATCGCAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGCAGTGATTGCAGCGTGCCACCGCGTTCTGAACACGCAGTGCATCATTTAcatcatt > 2:240603/1‑250 (MQ=255) aTGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGa > 2:80467/1‑218 (MQ=255) aTGTGAACCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGACCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGa < 1:80467/218‑1 (MQ=255) gACCCGTTTTGGTAATTAAGCTAAGACCATTATTCACGGTGAGGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAAAAGCAGGGCAGCATGTACATCATGAACAGTACGGAAAACa < 1:479686/251‑1 (MQ=255) cGGTTTGGTAATGAATCAAAGACCATGTTTCACGGTGATGGGCTTGCCGAACTTAAAAAGATCACCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAAAAGCAGGGCAGCATGTACATCATGAACAGTACGGAAAACATGcc < 1:254130/251‑1 (MQ=255) tGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCACGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAACAGCAGGGCAGCATGTACATCATGAACAGTACGGAAAACATGCCCttt > 2:180715/1‑250 (MQ=255) | AGCCCCTGTTGGACATGGTGATGCAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAA‑TTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAAAAGCAGGGCAGCATGTACATCATGAACAGTACGGAAAACATGCCCTTT > NC_000913/3411449‑3411931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |