| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,825,726 | T→C | intergenic (‑150/‑106) | mltB ← / → srlA | membrane‑bound lytic murein transglycosylase B/sorbitol‑specific PTS enzyme IIC2 component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,825,726 | 0 | T | C | 97.0% | 102.6 / ‑4.1 | 34 | intergenic (‑150/‑106) | mltB/srlA | membrane‑bound lytic murein transglycosylase B/sorbitol‑specific PTS enzyme IIC2 component |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (10/22); total (11/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.67e-01 | |||||||||||
GTGGTCGTATCAGTCTCAGTAGGTTTTGGCTTGCTGCTACAGGCGGCAAGCAACACAAAAAGGGGAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGTTTACCGGGATGGTGACCGGCATTCTTCCGCTGTTGATTAGCCTGCTGGTTATCATGAACGCACTGATT > NC_000913/2825482‑2825966 | gtggtCGTATCAGTCTCAGTAGGTTTTGGCTTGCTGCTACAGGCGGCAAGCAACACAAAAAGGGGAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTGTTCAAACTTTCAAATTAAAACATTTAt > 2:337847/1‑251 (MQ=255) cGTATCAGTCCCAGTAGGTTTTGGCTTGCTGCTACAGGCGGCAAGCAACACAAAAAGGGGAAGCAATGTTACATAACGACGCGTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTc < 2:158875/251‑1 (MQ=255) cAGTCTCAGTAGGTTTTGGCTTGCTGCTACAGGCGGCAAGCAACACAAAAAGGGGAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCAttt < 1:250419/250‑1 (MQ=255) aGGTTTTGGCTTGCTGCTACAGGCGGCAAGCAACACAAAAAGGGGAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCaaa > 1:318436/1‑250 (MQ=255) gtttcAGGCGGCAAGCCACCCATAAAGGGGAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCTTGTAACATATGCAACCAGGGGCAAGTACTGTAAAGCATCACGCCCCGTACAAGGAAGCCGTAGTCACTTCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATGTATCTTTCATTTTGCGATCAAAATAACACTTTCaaa < 2:133466/245‑1 (MQ=255) aCAGGCGGCAAGCAACACAAAAAGGGGAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCt < 1:189262/249‑1 (MQ=255) cggcAAGCAACACAAAAAGGGGAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATc < 1:414704/251‑1 (MQ=255) aagcaaCACAAAAAGGGGAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTgat < 1:427438/251‑1 (MQ=255) gcaaCACAAAAAGGGGAATCAATGTTACATAACGACTCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTAGGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATTCGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTgatta < 1:318554/251‑1 (MQ=255) aaCACAAAAAGGGGAAGCAATTTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCATGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGCAGCGGTAGTCACTGCCCGATACGGACCTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTGTCAGTTTGCGATCAAAATAACTCTTTGAAATCTTTCAATCTgattaga < 2:182205/251‑1 (MQ=255) cacaAAAAGGGGAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTgattagatt > 1:106772/1‑251 (MQ=255) gataaGCAATATTACATATCGACGCGTGAACAGGAGTGGTACAGTTAAGAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGGCCTGGACAAGGAAGTTGTAGTCGCCGCCCGATTCGTGCTTGACAAATCACAACTCATTCCCCAGTCCACCCCTTTATTCAAACGTTCAGATTAAAGGATTTATCTTGCGTGTTGTGATCAAAGTAACACCTTTAAAGCTTTCAATCTGATTAGAGTAGGTGGCCg < 1:473422/248‑1 (MQ=255) aaGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCACGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGttt > 2:327205/1‑251 (MQ=255) aTAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAATCATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACa < 1:221116/251‑1 (MQ=255) aaaCGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACaa < 1:191436/250‑1 (MQ=255) ggTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAAc > 1:126241/1‑250 (MQ=255) ccATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAAt < 1:504295/250‑1 (MQ=255) aGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATg < 2:49998/251‑1 (MQ=255) aTGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGt < 1:318699/250‑1 (MQ=255) gCCCCGCCCAAGGAAGCTGTAGTCACTGCCCGATTCGGACTTTACATAACTAAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATGAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGtt < 2:3517/251‑1 (MQ=255) ggtaagcACTGCACGATACGGACTTTACATAACTCAACTTATTCCCCGCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAAGCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTATGCATGGTGCAGAGTGGTTGTTCGGGCTGTTCCAAAAGGGCGGAGAgg < 2:46160/245‑1 (MQ=255) ggTAGTTACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAAGGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAgg < 2:71627/251‑1 (MQ=255) cACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGttt > 2:434903/1‑250 (MQ=255) gCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATgg > 2:118196/1‑200 (MQ=255) gCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATgg < 1:118196/200‑1 (MQ=255) cGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGTTTACCGGGATGGTg > 1:347767/1‑250 (MQ=255) ttACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGTTTACCGGGATGGTGACCgg < 1:439103/249‑1 (MQ=255) cATAACTCAACGCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGTTTACCGGGATGGTGACCGGCAtgc < 2:444710/251‑3 (MQ=255) actAACTTAACGCATTCCCCTCGCTATTCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCTTTACTCATGGTGCAGAGTGGGTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGTTTACCGGGATGGTGACCGGCAtgc < 2:272460/249‑3 (MQ=255) cGCTATCCTTTTATTCAAACTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGTTTACCGGGATGGTGACCGGTATTCTTCCGCTGTTGATTAGCctg < 1:406386/250‑1 (MQ=255) ttATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTGTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGTTTACCGGGATGGTGACCGGCATTCTTCCGCTGTTGATTAGCCTGCTGGTTATCAt > 1:161161/1‑251 (MQ=255) aCTTTCAAATTAAAACATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGTTTACCGGGATGGTGACCGGCATTCTTCCGCTGTTGATTAGCCTGCTGGTTATCATGAACGCAc < 1:327205/251‑1 (MQ=255) cTTTCAAATTAAAACATTTATCTTTCATTTTGAGATAACAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTACTAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTAAAGGTGCAGAGTGGGTTATCGGGCTGTTCCAAAAGGGCAGGGAGGTGTTTCCCGGGATGGCGACCGGCATTCTTCCGCTGTTGATTAGCCTGCTGGTTATCGTGAACGccct > 1:81699/1‑248 (MQ=255) aaaTTAACACATATATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGATTGGTAATAAAACAATTAATCCTGAAGGAGAGAACAATGATAGAAACCATTAAACATGATGCAGAGTGGTTTATCGTGCTGTTCCATAAGGGCGGAGAGGAGTTTACCGGGAGAGAGACCGGCATTCTTCAGCTGTTGATTAGCCTGCTGGATATCATGAACGCACTGAtt > 2:279695/1‑250 (MQ=255) | GTGGTCGTATCAGTCTCAGTAGGTTTTGGCTTGCTGCTACAGGCGGCAAGCAACACAAAAAGGGGAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGTTTACCGGGATGGTGACCGGCATTCTTCCGCTGTTGATTAGCCTGCTGGTTATCATGAACGCACTGATT > NC_000913/2825482‑2825966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |