| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 472,849 | A→G | G84G (GGA→GGG) | glnK → | nitrogen regulatory protein PII‑2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 472,849 | 0 | A | G | 97.2% | 109.4 / NA | 36 | G84G (GGA→GGG) | glnK | nitrogen regulatory protein PII‑2 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (16/19); minor base T (0/1); total (16/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
TGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCGACGATAAAAACTGGGCTTGCTTCACTGGCGATGCTTCCGGGACTGGTAATGGCTGCACCTGCGGTGGCCGATAAAGCCGAC > NC_000913/472608‑473058 | ggACCGTGATAAACAAACCATGCAAGCTGGAAGACGTACGTGAAGCGTTATCTTCCATTGGTAGTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGTGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGAGGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGc < 2:500652/250‑1 (MQ=255) ccGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGAc < 1:230886/251‑1 (MQ=255) cGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGATTACACCGGGAAAATTGGCgccg > 1:480626/1‑248 (MQ=255) gccggAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGGCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAAt < 2:238015/248‑1 (MQ=255) gACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAAcg > 1:26560/1‑251 (MQ=255) cGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAAcgcg > 1:417683/1‑251 (MQ=255) tCGTGAAGTGTTATCTTTCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGTTTCCGGCCGGCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACATCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGAGATTGCTGATGACCAACTCGATGAAGTGATCGATATCTTCAGTAAGGCGGCTTACCCCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTc < 2:395753/250‑1 (MQ=255) aGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATCCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGGAAAAATTGATGTGGCGATTGCTGATGACCAACTAGATGAAGTGATCGATATCGTCAGTAAGGCGGCATACACCGGGAAAATTGGTGACGGCAAATTCTTCGTCGCTGAATTGCAAAGAGTAattcgtc > 1:19047/1‑250 (MQ=255) tCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGACAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCCACGCGTCATTCGTATTCGTAc > 2:146987/1‑251 (MQ=255) aTTGGTATTCAGGGCCTGACCGGCACAGGAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGGGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGa < 2:172108/251‑1 (MQ=255) gggaTTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGAGGTGGCGATTGCTGATGACCAACTCGCTGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCTTCGCTGATTTGCAACGCGTCATTCGTATTCGTACCGGCGAAGc > 2:313320/4‑251 (MQ=255) gTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGCTGAAGAGATAGATATAGACAGTAAGGCGGCTTACACCGGGAAAATTGGCGACAGCAAACTCTTAGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGACGcc > 2:427339/1‑251 (MQ=255) aTTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCcga < 1:114545/251‑1 (MQ=255) aGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCa < 1:497991/222‑1 (MQ=255) aGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCcgacga > 1:3635/1‑250 (MQ=255) ggCCTGACCGTCACCGAAGTTAAATGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTTCCAAAAGTAAAAATTGATGGGTCGATTGCTGATGACCAACTCTATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAgc < 1:456441/251‑1 (MQ=255) cGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGt > 1:461181/1‑251 (MQ=255) gTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGc < 1:146987/251‑1 (MQ=255) ttCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCa > 1:214200/1‑250 (MQ=255) cGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACa < 2:104311/251‑1 (MQ=255) gCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGTAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGa < 1:207494/251‑1 (MQ=255) aaGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGaaaaa < 2:175576/251‑1 (MQ=255) gggCATGCCGATCTGTACCGGGGGGGGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAAGTGATGTGGCGAGTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCTGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGCACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATg < 2:142802/251‑1 (MQ=255) aTGCCGAGCTGTACCGGGGGGCGGAATCCAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGAGACGGCAAAATCTTCGTCGATGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGAAACAGGAACGAAAAATGa > 1:356309/1‑248 (MQ=255) gggtggTACCGGGGGGCTGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGcg < 2:158413/246‑1 (MQ=255) gtGTACCGGGGGGCGGAAAACAGCGGAAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGcgacg < 2:417683/250‑1 (MQ=255) gggCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCCACAGGAACGACAAATGAAGATAGCGACGATAAAAACTg > 2:244015/1‑251 (MQ=255) aaTTGCCTGCCAAAAGTAAAAATGTATGTTGCGATTTCTTATCACCAACTCGATGAAGTGTTCGATATCGTCAGTAAGGCGGCTTACACCGGTAAAATTGGCTACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTGCCGTCGAACCCGACGAAGCGGCGCTGTAATCTCTTGCACCCAGCAACTGGAACGAAAAATGAAGCTATCGTCGATAAAAACTGGGCTTGTTTCACTGGc < 1:65087/250‑1 (MQ=255) aaaaGTAAAAATTGAGGGGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCGACGATAAAAACTGGGCTTGCTTCACTGGCGATGCTTCCggg < 1:433838/251‑1 (MQ=255) aaTTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGACAGAAAAATGAAGATAGCGACGATAAAAACTGGGCTTGCTTCACTGGCGATGCTGCCGGGACTGGTAAt > 2:400584/1‑251 (MQ=255) gaCCAACTCTATGAAGTGATCGAGATCGGCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCGTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCcg < 1:297371/121‑1 (MQ=255) gaCCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGACGCcg > 2:297371/1‑121 (MQ=255) cacGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCCACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCGACGATAAAAACTGGGCTTGCTTCACTGGCGATGCTTCCGGGACGGGTAATGGCTGCTCCTGCTGTGGCCGATAAAGcc < 1:186691/249‑1 (MQ=255) aTGAAGTGATCGATATAGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGACACACAGCAACAGGGACGAAAAATGAAGATAGCGACGATAAAAACTGGGCTTGCTTCACTGGCGATGCTTCCGGGACTGGTAATGGCTGCACCTGCGGTGGCCGATAAAGCCgcc > 1:94561/1‑248 (MQ=255) gATATCGTCAGTACGGCGGCTTACACCGGGAAAATTGGCGCCGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCattcgta > 2:56596/1‑82 (MQ=255) gATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCattcgta < 1:56596/82‑1 (MQ=255) | TGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCGACGATAAAAACTGGGCTTGCTTCACTGGCGATGCTTCCGGGACTGGTAATGGCTGCACCTGCGGTGGCCGATAAAGCCGAC > NC_000913/472608‑473058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |