| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 16,749 | T→A | intergenic (+192/+2) | insL1 → / ← hokC | IS186/IS421 family transposase/protein HokC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 16,749 | 0 | T | A | 89.7% | 75.1 / 2.9 | 29 | intergenic (+192/+2) | insL1/hokC | IS186/IS421 family transposase/protein HokC |
| Reads supporting (aligned to +/- strand): ref base T (1/2); new base A (21/5); total (22/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.60e-01 | |||||||||||
GCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTT‑GACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGAGGCCTCGGGTT > NC_000913/16512‑16977 | gCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTc > 1:52727/1‑251 (MQ=255) tttCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGc > 1:204937/1‑251 (MQ=255) ggATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTcc > 1:236544/1‑251 (MQ=255) cGAAACGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGAACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTg > 1:303611/1‑251 (MQ=255) cGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTg > 1:129456/1‑251 (MQ=255) gTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAAcc > 1:413155/1‑251 (MQ=255) ggAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGCCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATGGAAGAACGCGAGGCATCGTCTTAACGAGGCCCCGAGGCGTCGCATTCTTCAGATGGTTCACCCCTTAATTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTcaca < 1:26517/251‑1 (MQ=255) aatcccAAAAATGGGCACCTGGAGCTTACAGCAGGCCATACGAGGGACAGCATCCCTGACCGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGCGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTCAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACACGGATTCGCACGCCGTGAAAACAGCAACCTCCGTCTGGCCAGCTCGGATGTGAACCTCAAAGAgg > 2:223063/6‑251 (MQ=18) ggTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCCACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGtt > 1:498713/1‑251 (MQ=255) aTCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTAcc > 1:465089/1‑250 (MQ=255) gtgggccttccgggTGGCCATTCGGGGGACAGTACCCCTGACAGCCTAAAAAACGCAATTGAAGAACGCGAGGCATCGTCTAACCGAGGCCCGGGGGCGCCGCTTTCTTCAGATGGTTCAACCCTAAAGTTAGCGCTTATGGGATCACCCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAgc < 1:289355/239‑1 (MQ=25) cTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGGCTTTTCTCGTTACCAGCgccgcc > 1:401790/1‑251 (MQ=255) cGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGGGATAc > 2:137474/1‑251 (MQ=255) cTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGCTCAggg > 1:34132/1‑251 (MQ=255) cAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGCAACAGATGACGGTCCGGGGGCCAatcatc > 1:247329/1‑251 (MQ=37) gAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGAAGACGATCAGGGCGACAAAACTCGCCTTAtggagcttttttgct > 2:99659/1‑238 (MQ=38) gAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGAAACAGATGACGAACAGGGCGGCAATAATAGACATATGCTGCTTCATTGct > 1:62093/1‑251 (MQ=38) cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCCTCTTCATTGCTCTCTTCTCCTT‑GAACTTACGGTc > 1:329830/1‑251 (MQ=255) gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTtc > 2:180734/1‑147 (MQ=255) aTTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAgc > 2:363271/1‑148 (MQ=255) aTGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCCGGGCGACAATCATCGCCCTATGCTGCTTCATTGCTCTCTTCTCCTT‑GACCTTACGGTCAGTAAGAGGCACTCTACAtt > 1:99928/1‑250 (MQ=255) atgtagtcgtttatggaactccTCCCCGCCGTTGCACTTACTCGGATGCGTAAGCCGTGAAAACACCAACCGACGTCTGGCCATTTCGGATGTGAACCCCACAGAGTTCTTTTCTCTTTACCAGGGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTT‑GACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATag < 1:339829/230‑1 (MQ=255) tAGCGCTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGAGATACAGATGACGATCACGGCGAAAATAATCACCTTTTGCGGCTTCATTGATCTCTTCTCCTT‑GGACTTTCGGTCCGTAAGAGGCCCTCTAACTGTGtttcgcattatggggg > 1:291919/1‑237 (MQ=255) gcgttttcggcctccccccccGCCGTTGCACTTCCTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGGCTGGCCAGTTCGGATGGGAACCTCACAGAGGTCTTTTCTCGTAACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTT‑GACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGcc < 1:302872/234‑1 (MQ=255) gcgcTTATGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGGGGTCAAGATTGCGATCAGAGAGGCAAACACCCCCCTATGCTTCGTCATTGCTCTCTTCTCCTTTGAC‑TTCCGGTCAGTAAGAGGCACTCTACATGTGTTTAGCGTATAGGGGGcc > 2:381748/1‑251 (MQ=255) gtttgttggcctccccccccGCCGTGGCATTTACTCGGATTCTTAGGCCGTTAAAACAGCACCCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTT‑GACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCt < 1:462563/235‑1 (MQ=255) cTTATGGGATTACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGTTAAAGATGGAGGTCAGGGGGGCCATCATCTCCTTTTGCTGCTTCATTTCTCTCTTTTCCTT‑GACCTTTCGGTCAGTTAAAGGCACTTTACATGTGTTCCACATATAAGGGGCCTCg > 2:100885/1‑251 (MQ=255) ggggcacccccccccGCCGTTCCACTTACTCGGATTCGTAAGCCGGAAAAACAGCAACCCCCGTCTGGCCGGTTCGGATGTGACCCTCACAGAGGTCTTTTCCCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTT‑GACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGt < 1:381748/240‑1 (MQ=255) gggcccccccccccGCCGTTGCACTTACTCGGTTTCGTAAGCCGTAAAAACAGCCACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTT‑GACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGtt < 2:34132/241‑1 (MQ=255) | GCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTT‑GACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGAGGCCTCGGGTT > NC_000913/16512‑16977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |