| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,131,341 | Δ128 bp | IS5‑mediated | yghQ ← | putative transport protein YghQ |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3130367–3131345 | 3131468 | 124–1102 | 9 [8] | [1] 41 | [insH9]–[yghQ] | [insH9],[yghQ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 40 (0.840) | 39/484 | 0.3 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3131469 = | 0 (0.000) | coding (940/1068 nt) | yghQ | putative transport protein YghQ | |||||
TGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTG > NC_000913/2288671‑2289142 | ttaaCAATTTTATAACCGGAATTTAATACTGAGTATTCTGCTGCGCCATTCATCGCAATGTACTGCTACCCTCCGTTAATTTCAGTATTATTACTTACTCCAAATTCTTTTATATG‑CTGTTCTCCGCCCGGATTGAGTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTTTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGATTTTaagg < 2:440788/248‑1 (MQ=255) aaCAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATTTTTTTTCAGGACAACAACATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGCATATaagga > 1:247694/1‑249 (MQ=255) aaTTTGATAACCGTCATTTAATACTGAGTATTCGTCGGCGCCATTTATTTCAATGTACTGATACCCGCCGTTAATTTCAGTATTATTACTTACCCCAAATTCTGTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCGTTTTCCAGGACAACACCATCAACTGTCTCGCCATACTCAA‑CGGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTg < 2:380002/251‑1 (MQ=255) aTAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATa < 2:140513/251‑1 (MQ=255) gTCATTTAATACTGAGTATTCTGCGGCGCCATGCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCAGCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCggg < 1:437735/251‑1 (MQ=255) cATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATaaggaa < 1:125456/233‑1 (MQ=255) aGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTAATACTTACACCAAATTCTTTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCACATAAACCCGCTGGATTTCTTTTTCCAGGACAACACCCTCAACCGTCTCCACATACTATA‑CCATTTATTCCAATGCTATGGGAGAATATAAGGAGAGTGCGAAATAGATGGGAAATTCTTCTCgg > 1:382761/1‑251 (MQ=255) agtcgtcggctcaattcattTCAATGTATTGATAACCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTGCTCGGCTg < 2:361107/238‑1 (MQ=255) tGCGGCGCCATTCCTTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCACCTAAACCAGCTGGGTATCTTTTTTCAGGACAACACCATCAACTTTCTCCCCATACTCAAACAGT‑GATGGCAATGCTATGGGTGAATATAAAGAAAGGGCGAATAAAAGGGGGAAATCTTCTCGGCTggcgc > 2:144529/1‑247 (MQ=255) cTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCCA‑CAGTTGATGCCAATGCTATGGGGGAATATAAGGAAGGGGGGAATAAGCGGGGGAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtt > 1:305714/1‑251 (MQ=255) attattACTTACTCCAAATTCTTTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg < 1:144529/251‑1 (MQ=255) attattACTTACCCCAAATTCTGTTA‑GTGTCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGTGGACCCATTAACCAGCTGGATATCTATTTCCAGGACAACACCACCAACCTTCTCACCATACTCAA‑CAGTTGATTCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCTGCTGACGCAGACAGTTCATGTCTTCATGCTCGAGCCGCTTTTTTCTCCCGTAAATg < 2:411837/251‑1 (MQ=25) g‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttct < 1:300419/251‑1 (MQ=255) ctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCAAAACCAGCTGGATAACTTTTTCCAGGACAACACCATCAACTGTCTCACCAAACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCCGACTCAGtcatttcat > 1:279241/1‑179 (MQ=38) ctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat < 2:279241/179‑1 (MQ=255) aGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGTATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCTCCATTTAAgg < 1:94723/251‑1 (MQ=255) ttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGAAAACACCCTCAACTGTCTCACCCTACTCAA‑CCGTTGGTGCCAAAGCTATGGGTGAATATAAGGGAGGTGCGAATAAGCGGGGAAATTCTTTTCGGCTGGCTCCGTCCTTTCATTTCTTTATGTTTGAGCCGATTTTTTCTCCCGTAAATGACTTGAATAAGCCTTTTTATACCGCTTCTTCGCCCTTTTAGGCGTTATcccc > 1:370143/1‑251 (MQ=21) attattGGCTGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTTAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGttt < 2:430358/251‑1 (MQ=255) gCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCTATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTga < 2:210238/251‑1 (MQ=255) ggTCCCATATACCAGCTGGATATCTATTTCCAGGACAACACCAGCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGTGGAAATTCTTCTCGGCTGACTCAGTCATTTCAGTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCGTCGCCATGTAAGGCGTTATCCCCAGTCTTTAGTgaga < 2:111770/251‑1 (MQ=21) gTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTg > 1:107397/1‑247 (MQ=255) gATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTAt < 1:330180/251‑1 (MQ=255) tCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTc < 1:79919/250‑1 (MQ=255) cgtaaaacaCCATCAACTGTCTAACCATACTCAA‑CAGTTGCTGCCAATGCTATGCGTGATTATACGGCAGGTGAGCATAAGAGGGGAAATTCTTCTCGGCTGGCTCAGTCCTTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGATTCAGCCTATTTAGACCGTTTATTCACCATTTAAGTCTTTCTCCCCAGTTTTTAGTGAGATCTCTCCCACTGCAGTATCATTTGGTACGcc > 2:3380/6‑251 (MQ=14) caacaCCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGa > 2:52221/1‑250 (MQ=255) aacaCCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc < 1:30870/118‑1 (MQ=255) aacaCCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc > 2:30870/1‑118 (MQ=255) cATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATccc > 2:258009/1‑195 (MQ=255) cATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATccc < 1:258009/195‑1 (MQ=255) cACCATACTCAT‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCg < 1:20062/248‑1 (MQ=255) cACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGATCCGATTTTTTCTCCCGTAAATGCCTTGAATCATCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCGCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGt < 2:191315/249‑1 (MQ=255) aTACTCAA‑CAGTTGATGCCAATGCTATGGCTGAATATAAGGAAGGTGCGAAGAAGCGGGGAAATTCTTCTCGGCGTACTCAGCCATTTCACTTCTTCATGCTTGAGCCGATTTTTTCTCCCGTAAATGCCTGGAATCAGCCTATTTAGACTGTTTCTTCGCCATTTAATGCGTTATCCCCATTTTTTAGTAAGAACTCCCCCACTGACTTATCATTTGTTCCGCCCGACACAGGTTGGCCAGCGTGTATaa < 2:423844/251‑1 (MQ=14) aCTCAA‑CATTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATTTTTGAGCTGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTTACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAAc < 1:85547/250‑1 (MQ=255) aCTCAA‑CAGTTGATGCAAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCAGTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCTCCCGAAACAGGTTGGCCAGCGTGAATAAc < 1:341324/250‑1 (MQ=255) aGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCCCTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGACTAACATCGcc > 2:301149/1‑249 (MQ=255) gATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTg < 1:448746/250‑1 (MQ=40) | TGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATG‑CTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAA‑CAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTG > NC_000913/2288671‑2289142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |