| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,641,439 | 2 bp→CA | coding (498‑499/687 nt) | yjtD → | putative tRNA/rRNA methyltransferase YjtD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,641,439 | 0 | T | C | 94.7% | 49.6 / ‑4.0 | 19 | D166D (GAT→GAC) | yjtD | putative tRNA/rRNA methyltransferase YjtD |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (7/11); total (7/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.64e-01 | |||||||||||
| * | NC_000913 | 4,641,440 | 0 | G | A | 94.4% | 45.1 / ‑4.2 | 19 | A167T (GCA→ACA) | yjtD | putative tRNA/rRNA methyltransferase YjtD |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (7/10); total (7/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 | |||||||||||
GGTGCCGCTGTTAGAGGAAAAATCTTCATGGATGAGCCATGCCGCGCTGGTGTTTGGTCGCGAAGATTCCGGGTTGACTAACGAAGAGTTAGCGTTGGCTGACGTTCTTACTGGTGTGCCGATGGTGGCGGATTATCCTTCGCTCAATCTGGGGCAGGCGGTGATGGTCTATTGCTATCAATTAGCAACATTAATACAACAACCGGCGAAAAGTG‑ATGCAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGCCATGACATTGCTGACGACTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAACAACGCCTGGGGCTTTTAGAGCAACGAGACACGGCAATGTTGCACCGTTTGCTGCATGATATTGAAAAAAATATCACCAAATAAAAAACGCCTTAGTAAGTATTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4641223‑4641652 || ggtaccGCTGTTAGAGGAAAAATCTTCATGGATGAGCCATGCCGCGCTGGTGTTTGGTCGCGAAGATGCCGGGCTGACTAACGAAGAGTTAGCGTTGGCTGACGTTCTTACTGGTGTGCCGATGGTGGCAGATTATCCTTCGCTCAATCTGGGGCAGGCAGTGATGGTCTATTGCTATCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTAc < 1:47813/247‑1 (MQ=255)ggtaccGCTGTTAGAGGAAAAATCTGCATGGATGAGCCAGGCCGCGCTGGTGTTTGGTCGCGAAGATTCCGGGCTGAATAACGAATAGTGAGCGTTGGCTGACGTTCTTACTGGTGTGCCGATGGTGGCAGATTATCCTTCGCTCAATCTGGGGCAGGCAGTGATGGTCTATTGCTATCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTAc < 2:313326/247‑1 (MQ=255) gCTGTTAGAGGAAAAATCTTCATGGATGAGACATGCCGCGCTGGTGTTTGGTCGCGAAGATTCCGGGCTGACTAACGAAGAGTTAGCGTTGGCTGACGTTCTTACTGGTGTGCCGATGGTGGCAGATTATCCTTCGCTCAATCTGGGGCAGGCAGTGATGGTCTATTGCTATCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTAcgcgcac > 1:297418/1‑248 (MQ=255) aaaaaTCTTCATGGATGAGCCATGCCGCGCTGGTGTTTGGTCGCGAAGATTCCGGGCTGACTAACGAAGAGTTAGCGTTGGCTGACGTTCTTACTGGTGTGCCGATGGTGGCAGATTATCCTTCGCTCAATCTGGGGCAGGCAGTGATGGTCTATTGCTATCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGTCATggc > 1:383048/1‑248 (MQ=255) ggATGAGCCATGCCGCGCTGGTGTTTGGTCGCGAAGATTCCGGGCTGACTAACGAAGAGTTAGCGTTGGCTGACGTTCTTACTGGTGTGCCGATGGTGGCAGATTATCCTTCGCTCAATCTGGGGCAGGCAGTGATGGTCTATTGCTATCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGTCATGGCATTGCTGACGAct < 1:90097/251‑1 (MQ=255) gggctGACTAACGAAGAGTTAGCGTTGGCTGACGTTCTTACTGGTGTGCCGATGGTGGCAGATTATCCTTCGCTCAATCTGGGGCAGGCAGTGATGGTCTATTGCTATCAATTAGCAACATTAATACAACAAACGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGTCATGGCATTGCTGACGACTCTGGCAGTGGCAGATGACATCAAACTGGTCGACTGGTTac > 1:370129/5‑250 (MQ=255) gTTGGCTGACGTTCTTACTGGTGTGCCGAGGGTGGCAGATTATCCTTCGCTCAATCTGGGGCAGGCAGTGATGGTCTATTGCTATCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCATCTGCAAGCTTTACGCGAACGAGTCATGGCATTGCGGACGACTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAGCAACGCCTGGGGCTTTTAGAGc < 1:244754/251‑1 (MQ=255) gttatgaCTGGTGCTCCGATGGTGGCAGATTATCCGTCGCTCAATCGGGGGCAGGCAGTGATTGACTATTGCTACCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGTCATGGCAGTGCTGACGACTCTGGCAGTGGCAGATGACATAAAACGGGTCGACTGGTTACAGCAACGCCTGGGTCTTTTAGATCAACGAGacac < 2:19368/245‑1 (MQ=255) ggcagATTATCCGTCGCGCAATCTGGGGCAGGCAGGGATGGTCTATTGCTATCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACCCAACGGCAGACCAACATCAACTGCAAGCTGTACGCGAACGAGTCATGGCATTGCTGACGGCTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAGCAACGCCTGGGGCTTTTAGAGCAACGAGACACGGCAATGTTGCACCGTTtgctg < 2:363576/246‑1 (MQ=255) ttATCCTTCGCTCAATCTGGGGCAGGCGGTGATGGTCTATTGCTATCAATTAGCAACATTAATACAACAACCGGCGAAAAGTG‑ATGCAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGCCATGACATTGCTGACGACTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAACAACGCCTGGGGCTTTTagag < 1:97775/211‑1 (MQ=255) ggTCTATTGCTATCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGTCATGGCATTGCTGACGACTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAGCAACGCCTGGGGCTTTTAGAGCAACGAGACACGGCAATGTTGCACCGTTTGCTGCATGATATTGAAAAAAATATCACCAAATAAAAAACGCCtt > 1:275031/1‑251 (MQ=255) tGCTATCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGTCATGGCATTGCTGACGACTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAGCAACGCCTGGGGCTTTTAGAGCAACGAGacac < 1:297894/182‑1 (MQ=255) tGCTATCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGTCATGGCATTGCTGACGACTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAGCAACGCCTGGGGCTTTTAGAGCAACGAGacac > 2:297894/1‑182 (MQ=255) gCTATCAATTAGCAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGTCATTGCATTGCTGACGACTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAGCAACGCCTGGGGCTTTTAGAGCAACGAGACACGGCAATGTTGCACCGTTTGCTGCATGATATTGAAAAAAATATCACCAAATAAAAAACGCCTTagtaagt < 1:343633/250‑1 (MQ=255) tATCAATTAGCAACATTAATACAACAACCGCCGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGTCATGGCATTGCTGACGACTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAGCAACGCCTGGGGCTTTTAGAGCAACGAGACACGGCAATGTTGCACCGTTtgct > 1:258650/1‑200 (MQ=255) tATCAATGAGCAACAGTAAGACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTGTACGCGAACGAGTCATGTCATTGCGGACGACTCTGGCAGTGTCAGATGACATAAAACGGGTCGTCTGGTTACAGCAACGCCTGGGGCTTTTAGAGCAACGAGACACGGCAATGTTGCACCTTTtgct < 2:258650/200‑1 (MQ=255) acaaatAGCAACATTAATACAACAACCGACGAAAA‑TGTACACAACGGCAGACCAACAGCAACTGCAAGCTTTACGCGAACGAGTCATGGCATTGCTGACGACTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAGCAACGCCTGGGGCTTTTAGAGCAACGAGACACGGCAATGTTGCACCGTTTGCTGCATGATATTGAAAAAAATATCACCAAATAAAAAACGCCTTAGTAAGTAtttt < 2:275031/246‑1 (MQ=255) cAACATTAATACAACAACCGACGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTTCGCGAACGAGTCATGGCATTGCTGACGACGCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAGCAACGCCTGGGGCTTTTAGAGCAACTAGACACGGCAATGTTGCACCGTTTGCTGCATGATATTGAAAAAAATATCACCAAATAAAAAACGCCTTAGTAAGTATTTTTCagcttt > 1:15895‑M2/1‑245 (MQ=255) cGAAAAGTG‑ACACAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGTCATGGCATTGCTGACGACTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAGCAACGCCTGGGGCTTTTAGAGCAACGAGACACGGCAATGTTGCACCGTTTGCTGCATGATATTGAAAAAAATATCACCAAATAAAAAACGCCTTAGTAAGTATTTTTCagcttttcattctaactgaaacgggc < 2:351288‑M2/250‑27 (MQ=255) || GGTGCCGCTGTTAGAGGAAAAATCTTCATGGATGAGCCATGCCGCGCTGGTGTTTGGTCGCGAAGATTCCGGGTTGACTAACGAAGAGTTAGCGTTGGCTGACGTTCTTACTGGTGTGCCGATGGTGGCGGATTATCCTTCGCTCAATCTGGGGCAGGCGGTGATGGTCTATTGCTATCAATTAGCAACATTAATACAACAACCGGCGAAAAGTG‑ATGCAACGGCAGACCAACATCAACTGCAAGCTTTACGCGAACGAGCCATGACATTGCTGACGACTCTGGCAGTGGCAGATGACATAAAACTGGTCGACTGGTTACAACAACGCCTGGGGCTTTTAGAGCAACGAGACACGGCAATGTTGCACCGTTTGCTGCATGATATTGAAAAAAATATCACCAAATAAAAAACGCCTTAGTAAGTATTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4641223‑4641652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |