| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,512,423 | 2 bp→TT | coding (283‑284/1239 nt) | mntH ← | Mn(2(+))/Fe(2(+)): H(+) symporter MntH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,512,423 | 0 | C | T | 94.1% | 42.1 / ‑5.8 | 17 | W95K (TGG→AAG) | mntH | Mn(2(+))/Fe(2(+)): H(+) symporter MntH |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (9/7); total (9/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 2,512,424 | 0 | A | T | 100.0% | 38.4 / NA | 17 | W95K (TGG→AAG) | mntH | Mn(2(+))/Fe(2(+)): H(+) symporter MntH |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (9/8); total (9/8) | |||||||||||
AATGTAAGCCGCGGCAACAAACAACAGTAACCCGCCAATCACTTTCTCCAGCGGTTTTTGCCCGCGACGTTGCAGCATTAAAATCAGGAAAGTCGCGATCCCCGTCAGCACCGCGCCCTGCAACAACGAAACACCAAGAATGAGTTTAAAACCGATCGCCGCACCAATAAATTCCGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACCACACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAATCAGCATCGCCATCAGGTTGGCCCAAACGACAACCCACAGTAGCTGATAGCCGAAGCTAGCACCCGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGC > NC_000913/2512200‑2512663 || aaTGTAAGCCGCGGCAACAAACAACAGTAACCCGCCAATCACTTTCTCCAGCGGTTTTTGCCCGCGACGTTGCAGCATTAAAATCAGGAAAGTCGCGATCCCCGTCAGCACCGCGCCCTGCAACAACGAAACACCAAGAATGAGTTTAAAACCGATCGCCGCACCAATAAATTCCGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATcgc > 1:218033/1‑251 (MQ=255) caacaaACAACAGTAACCCGCCAATAACTTTCTCCCGCGGTTTTTGCCCGCGACGTTGCAGCATTAAAATCAGGAAAATCGCGATCCCCGTCAGCACCGCGCCCTGCAACAACGAAACCCCAAGAATGAGTTTAAAACCGATCGCCGCACCAATAAATTCCGCCAGGTCGGTTGCAATCGCAATAATTTCTGCATGAACCCAATAGAACTTAACTACGGGACGCGGATAGTGATCGCGAATCTACTCCGcc > 2:353180/1‑251 (MQ=255) aacaaacaACAGTAACCCGCCAATCACTTTCTCCAGCGGTTTTTGCCCGCGACGTTGCAGCATTAAAATCAGGAAAGTCGCGATCCCCGTCAGCACCGCGCCCTGCAACAACGAAACACCAAGAATGAGTTTAAAACCGATCGCCGCACCAATAAATTCCGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCa < 1:121138/251‑1 (MQ=255) ccAGCGGTTTTTGCCCGCGACGTTGCAGCATTAAAATCAGGAAAGTCGCGATCCCCGTCAGCACCGCGCCCTGCAACAACGAAACACCAAGAATGAGTTTAAAACCGATCGCCGCACCAATAAATTCCGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGc > 1:45664/1‑250 (MQ=255) gCCCGCGACGTTGCAGCATTAAAATCAGGAAAGTCGCGATCCCCGTCAGCACCGCGCCCTGCAACAACGAAACACCAAGAATGAGTTTAAAACCGATCGCCGCACCAATAAATTCCGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTg < 1:328828/250‑1 (MQ=255) ccGCGACGTTGCAGCATTAAAATCAGGAAAGTCGCGATCCCCGTCAGCACCGCGCCCTGCAACAACGAAACACCAAGAATGAGTTTAAAACCGATCGCCGCACCAATAAATTCCGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGAATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAAt > 1:359190/1‑251 (MQ=255) gAAAGTCGCGATCCCCGTCAGCACCGCGCCCTGCAACAACGAAACCCCAAGCATGAGTTTAATACCGATCGCCGCACCAATAAATTCCGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAATCAGCATCGCCATCGGGTTGGCCCaa > 1:115511/1‑250 (MQ=255) aGTCGCGATCCCCGTCAGAACCGCGCCCTGCAACAACGAAACACCAAGAGTGAGTTTAAAACCGATCGCAGAACAAATAAATTCCGCAAGGCCGGATGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGTTAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTAGCAATCCCTAGTATGACCGACAGGATCTGAATCAGCATCGCCATCAGGTTGGCCCAAACg > 1:349744/1‑250 (MQ=255) caacGAAACACCAAGAATGAGTTTAAAACCGATCGCCGCACCAATAAATTCCGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAATCAGCATCGCCATCAGGTTGGCCCAAACGACAACCCACAGTAGCTGATAGCCGAAGCTAGCAc < 1:50821/251‑1 (MQ=255) acacCAAGAATGAGTTTAAAACCGATCGCCGCACCAATAAATTCCGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAATCAGCATCGCCATCAGGTTGGCCCAAACGACAACCCACAGTAGCTGCTAGCCGAAGCTAGCACCCGCCTg > 1:51570/1‑251 (MQ=255) aTTCCGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAATCAGCATCGCCATCAGGTTGGCCCAAACGACAACCCACAGTAGCTGATAGCCGAAGCTAGCACCCGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATc < 1:84202/251‑1 (MQ=255) cGCCAGGTCGGTTGCCATCGCAATAGTTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGCTTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAATCAGCATCGCCATCAGGATGGCCCAAACGACAACCCACAGTAg > 2:308621/1‑180 (MQ=255) cGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAAGCAGCATCGCCATCAGGTTGGCCCAAACGACAACCCACAGTAg < 1:308621/180‑1 (MQ=255) gCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAATCAGCATCGCCATCAGGTTGGCCCAAACGACAACCCACAGTAGCTGATAGCCGAAGCTAGCACCCGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATcgccgc < 1:44578/251‑1 (MQ=255) ttCTGCCTGAACCCATAAGAACTTCTCTACGGGAGACGGATAGGGATCGCGAATCTGCACCGCCAGATTTTTACCGGTGGCAACCCCTAGGTTGGCAGAGAGGATCGGAATCAGCACCGCCATCAGGTTGGCCCAAACGACAACCCACAGTAGCGGTTAGCCGAAGCTAGCACCCGCCTGAATATTTGTCGCAAAGTTACCGGGATCGATAGAACCAATCGCCGCAATGAACGCAGGTCTCATTAATGCg < 2:45664/250‑1 (MQ=255) tGCCTGAACCCAATAGAACTTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAATCAGCATCGCCATCAGGTTGGCCCAAACGACAACCCACAGTAGCTGATAGCCGAAGCTAGCACCAGCCTGAATATTGGTCGCAAAGTTACAGGAATCGTGATAACAAATCGCCGCAATGAACGCAGGGCCCATTAATGCGAGcc > 2:134127/1‑251 (MQ=255) ccAATAGTACCTCACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAATCAGCATCGCCATCAGGTTGGCCCAAACGACATCCCACAGTAGCTGATAGCCGAAGCTAGCACCCGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATTATCGCAGGTCCCATTAATGTGTGCCTCATCTTgc < 1:316859/251‑1 (MQ=255) || AATGTAAGCCGCGGCAACAAACAACAGTAACCCGCCAATCACTTTCTCCAGCGGTTTTTGCCCGCGACGTTGCAGCATTAAAATCAGGAAAGTCGCGATCCCCGTCAGCACCGCGCCCTGCAACAACGAAACACCAAGAATGAGTTTAAAACCGATCGCCGCACCAATAAATTCCGCCAGGTCGGTTGCCATCGCAATAATTTCTGCCTGAACCCAATAGAACCACACTACGGGACGCGGATAGTGATCGCGAATCTGCTCCGCCAGATTTTTACCGGTGGCAATCCCTAGTTTGGCAGAGAGGATCTGAATCAGCATCGCCATCAGGTTGGCCCAAACGACAACCCACAGTAGCTGATAGCCGAAGCTAGCACCCGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGC > NC_000913/2512200‑2512663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |