| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,497,385 | 4 bp→CAA | coding (530‑533/1656 nt) | opgD → | glucans biosynthesis protein D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,497,385 | 0 | T | C | 80.0% | 20.1 / 1.7 | 15 | F177S (TTT→TCT) | opgD | glucans biosynthesis protein D |
| Reads supporting (aligned to +/- strand): ref base T (1/2); new base C (5/7); total (6/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01 | |||||||||||
| * | NC_000913 | 1,497,386 | 0 | T | . | 85.7% | 34.8 / 3.9 | 15 | coding (531/1656 nt) | opgD | glucans biosynthesis protein D |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base . (5/7); total (6/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 | |||||||||||
| * | NC_000913 | 1,497,387 | 0 | C | A | 86.7% | 32.4 / ‑2.2 | 15 | L178N (CTC→AAC) | opgD | glucans biosynthesis protein D |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base A (6/7); total (6/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.20e-01 | |||||||||||
| * | NC_000913 | 1,497,388 | 0 | T | A | 86.7% | 30.3 / ‑2.8 | 15 | L178N (CTC→AAC) | opgD | glucans biosynthesis protein D |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base A (6/7); total (6/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.80e-01 | |||||||||||
CGTTGAGAACCGTCAACTGGACGCTCAGTTCTTCCATATGGGAATGGGATTCCGTCGCCGCGTTCGTATGTTTTCTGTAGATCCAGCAACACATCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGTTCACTATCCATTGTGAGAAAAGTCAGGTG > NC_000913/1497140‑1497620 ||| cGTTGAGATTCGTCAACTGGACGCTTAGTTCTTCCATATGGGAATGGGATTTCGGCGCCGCGTTCGTATGTTTTCTGTATATCCAGCAACACATCTGGCGCGTGAAAGTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGAGACAAAACAATTAGAATGGCAAAGCGATCGCGGCTTTGCGGGTTTTCGCGGGTTTAAAGCCCCCGAGCTGGCGCGCCGTGATGTAGTTTCTTTTCTCg < 2:54933/251‑1 (MQ=255) ggACTCTCAGTTCTTCCATAGGGGAATGGGATTCCGGCGCCGCTTTCGTATGTTTTCTGTAGATCCAGCAACACAGCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCcgc < 2:172798/250‑1 (MQ=255) gggtatgggaTTACGTCGCCGCGTTCGTATGCTTTCTGTAGCTCCAGTAACACATCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCTGGTTTGCGCTTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGGGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATa < 1:138702/247‑1 (MQ=255) ggattccgactccgtgtgtgTATGGTTTTTGTAGTTCCAGTAACACATCTGGCGTGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACGACGATGCAGGTGTTGATACAAAACAATTAGAAGGTAAAAGCGATCTCGTCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCGGTGATGTAGTTTCATC‑AACGGCGCGAGTTATTTCCGCGCTGTTGATGATACATATTAATACGGTTTg < 2:384475/232‑1 (MQ=255) aTGTTTTCTGTAGATCCAGCAACACATCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATc < 1:297399/251‑1 (MQ=255) tCCAGCAACACATCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTCGTATCATC‑AACGGCGCGGGTTATTTCCGCGCCGTTGATGATACATATCAATCAGGTTTGTCAGCCCGCGCCCTGTCGCTGGACACTTCCACCg > 2:9684/1‑250 (MQ=255) aGCAACACATCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAg < 1:367928/251‑1 (MQ=255) gttgttCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGCCAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTg > 1:76995/1‑250 (MQ=255) aaCGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTCAAGCCCCCGAACTGGCGCGCAGTGATGTAGTATCATC‑AACGGCGAGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGATTGATACGGTAAAACCg > 1:19632/1‑251 (MQ=255) gCAGGTGTTGATACAAAACAATTAGAAGGGAAAAGCCATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCCCGCCGTGATGTAGTATCATC‑AACGGCGCGATTTATTTCCGCTCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGc < 1:343998/250‑1 (MQ=255) ggTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACt > 1:353358/1‑251 (MQ=255) gtTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGCGTTTAAAGCCCCCGCACCGGCGAGCAGTGATGTCGTAT‑AATCAACCGCGCGAGATATTTCCACGCCGTTGATGATACATATCACTACAGTTTGCCGGCCCGCGGCCAGGAGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGACTTCTGACTTGATACGGCAAAACCgcaggcccatacc > 1:348315/1‑239 (MQ=255) aaaCAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTGCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTGTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGtt < 1:135992/251‑1 (MQ=255) ttAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATC‑AACGGCGCGAGTTATTTCCGCGCCGATGATGATACATATCAATACGGGTTGTCGGCCCGCGGCCTGGAGATCGACACTTACACCGACAGTAAAGTAGAGTACCCCGACTTTAACGCCGTCTGGTTTGATACGGTAAAACCGGGGGCAACTAACTTTACCGTTTATg > 1:216699/1‑249 (MQ=255) cGTGATGTAGTATCATC‑AACGGCGCTAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCGGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCGCGATAGCGCTAGCATTACTGGTGCCTATAAGTTCACTATCCATTGTGAGAAAAGTCAGGTg < 1:224597/251‑1 (MQ=255) ||| CGTTGAGAACCGTCAACTGGACGCTCAGTTCTTCCATATGGGAATGGGATTCCGTCGCCGCGTTCGTATGTTTTCTGTAGATCCAGCAACACATCTGGCGCGTGAAATTCACTTTCGCCCGGAGTTGTTCAAATACAACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGTTCACTATCCATTGTGAGAAAAGTCAGGTG > NC_000913/1497140‑1497620 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |