| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,331,059 | 2 bp→AT | coding (12‑13/2598 nt) | topA → | DNA topoisomerase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,331,059 | 0 | T | A | 95.8% | 61.8 / NA | 25 | A4A (GCT→GCA) | topA | DNA topoisomerase 1 |
| Reads supporting (aligned to +/- strand): ref base T (0/1); major base A (16/7); minor base C (1/0); total (17/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 | |||||||||||
| * | NC_000913 | 1,331,060 | 0 | C | T | 100.0% | 71.2 / NA | 25 | L5F (CTT→TTT) | topA | DNA topoisomerase 1 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (17/8); total (17/8) | |||||||||||
CGCTTTCGTCAATCTGGCAATAGATTTGCTTGACATTCGACCAAAATTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑TCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTAT > NC_000913/1330817‑1331296 || cGCTTTCGTCAATCTGGCAATAGATTTGCTTGACATTCGACCAAAATTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCAt > 1:315495/1‑251 (MQ=255) cTTTCGTCAATCTGGCAATAGATTTGCTTGACATTCGACCAAAATTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCg > 1:287247/1‑251 (MQ=255) ggCAATAGATTTGCTTGACATTCGACCAAAATTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTcccc < 1:371451/248‑1 (MQ=255) gCTTGACATTCGACCAAAATTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCaaaa < 1:201008/250‑1 (MQ=255) tGACATTCGACCAAAATTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGAt > 1:303704/1‑251 (MQ=255) aTTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTggg > 1:82256/1‑251 (MQ=255) ttCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGt > 1:19248/1‑251 (MQ=255) tGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACt > 1:91589/1‑250 (MQ=255) aGGCCAAGACATGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTAACGACAAGAGGTTGATATCCGAAGTGAGCGAGTCCATATCGGACACTCGTTGCCAGAGGAAGGATTATCAACATGCGACGCATTCCTGGAAAAATCAAATTAGGTCAGTTGAATATGGGTAAAGC‑ATTTGTAATCGTTGAGTCCCAGGCATAAGCCAAAACGATCAACAAGTAAATGGGGAGTGACTACGTGGTGAAAtaca > 2:374937/1‑247 (MQ=255) caTTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGCGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCACATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCAATTTGCCGAcc > 2:286509/2‑250 (MQ=255) tGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTc > 1:26972/1‑218 (MQ=255) tGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACACGTTGACAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGCATTTTG‑CATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGGATCTGGGTAGTGATTACGTGGTTAAATCCAGCGTc < 2:26972/218‑1 (MQ=255) atatCCGCAGAGAGCGAGTCCATATCGGTATCTCTTTGACAGTGTAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTATGTAAGGTGAATATGTGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCAAAAAGAGTGCCGtctcg < 2:33495/250‑2 (MQ=255) atCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCAAAAAGCGTGCCGACTCTaac > 2:247209/1‑249 (MQ=255) cGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACACGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCCAAAAGAGTGCCGACTCTACCTCAACCAAGACGGCTaaaaatcc > 2:60194/1‑248 (MQ=255) ggTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCt > 1:82518/1‑251 (MQ=255) gTTGCCAGTGGAAGGTATATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGTTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGa < 1:46458/251‑1 (MQ=255) taGTGGAAGGTTTATCCACGTGCGACGCATTACTGGAAGAATCACATTAGGTAAGGTGAATATGGGTAACGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGAAGTGACTACGTGGTGAACTCCAGCGTCGGCCACATCCGCGCTTTGCCGACCATAGGCTCAGCTGCCACACAGAGTGCCGACGCTACCTCCACCCAGCCGGCTAAAAAGCCTAAATAGGCTGAAc > 2:27793/2‑251 (MQ=255) ggggAAGGTTTATTAACGGGCGACGCATTCCTGGAAGAATCAAATAAGGTAAAGTGAATATGGGTAAAGC‑ATTAGGCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAGCAAGTATCTGGGTAGAGACGAGGTGGTGAAATCCAGCTTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCGGCCAAAAAGGGTGCCGACACTACCGCCACCAAGACGGCTGAAAATCCTAAAATGTATGAACGt < 2:346333/249‑1 (MQ=255) ggAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTg < 1:60194/250‑1 (MQ=255) tCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑CTTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGACAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTc > 1:41759/1‑251 (MQ=255) aTTAGGTAAGGAGAATAGGGATAAAGC‑ATTTGTCATCGATGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGCAAAATCCGCGATTTGCCGACCAGTGGCTCATCTGCCAAAGAGAGTGCAGACTCTACCTCCACCAAGACGCCTAAAAAGACTAACAAGGATGAACGGGGCGCTCCAGGCAACCTTATGGGGGTTTACCCGAGGCAAAAtt > 2:294058/1‑251 (MQ=255) ggTAAGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTggg > 1:73114/1‑250 (MQ=255) aaGGTGAATATGGGTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgc > 1:91757/1‑251 (MQ=255) ataggggTAAAGC‑ATTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAATCGATCAACAAGTAGCTGGGTAGTGACTACGGGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTAt < 2:91589/247‑1 (MQ=255) || CGCTTTCGTCAATCTGGCAATAGATTTGCTTGACATTCGACCAAAATTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGC‑TCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTAT > NC_000913/1330817‑1331296 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |