| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,639,502 | C→T | T442M (ACG→ATG) | creD → | putative inner membrane protein CreD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,639,502 | 0 | C | T | 92.9% | 26.1 / ‑6.0 | 14 | T442M (ACG→ATG) | creD | putative inner membrane protein CreD |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (4/9); total (5/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
GGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTT > NC_000913/4639255‑4639748 | ggggCGTTAATGAACGGTATTTATTTGCAGGCGGTATTGAAAGGCTGTCGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGTTGTGATGTGGGTACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATAACGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGa < 1:222128/251‑1 (MQ=255) gggCGTTAATGAACGGTATTTATTTGCAGGCGGTATTGAAAGGCTGGCGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGAc < 1:74858/251‑1 (MQ=255) gcaCGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAAAAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGAGATGTGGGGACTGCACACCTCTGCCGATAGCGCGCTGTTGTTGGGAAACAGTGTGCTGGGGGTGGCGATGGCCGGCATGATGATTGGGACCCGTAATATCGACGGGTGTGCGTTTTAACTTCCGAACTCGAAAGCCAGAAAAGAAGGTAAAACGGaaggttctgtgc > 2:101945/3‑240 (MQ=255) tGAAAGGCTGGCGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGGGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCTGCATGATGTTTGTGACTCGTAATATCGACTGGGATGCGTTTTCACTGCCGAAAATGAAAGCCAGGAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAAt > 1:260180/1‑250 (MQ=255) aggctggcgCAACTGCTTGTTGTTTACCCTCGCGCTGTTGTTGCTGGAGGTTGTGATTTGGTGACTTCTCAACTCTGCCGATTGCGCGCTTTTGTTGGGAACCAGTGTGCTGGTGGTGGTGCTGGCCGGCATTATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTATAGAATTTACAATGGACGATCAAGTACGTATCTGGAAATAAGGTTGAAAAATaaaaa < 1:221951/243‑1 (MQ=255) aaaCTCGGCCGATAGCGGGCTGTTGTTGGGTACCAGTGTGCTGGTGGTGGCGCTGGCCGGCAGGATGTTTGTGACTCTTAAAATCGACTGGTATGCTTTTTCCCTCCCGAAAATGAAAGCAAGTAAAAAAGTTACAATGGCCGATCAATTACGTTTCTGGAAATAAGTTTGAAAAATAAAAACGGCGTTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGa < 1:129224/247‑1 (MQ=255) gCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACGCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATaa < 1:299231/249‑1 (MQ=255) tAGCGCGCTGTTGTTGGGAACCAGTGAGCTGGTGGTTGCGCTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGCTCAATTACGTATCTGGAAATAAGGTTGAAAATTAAAAACGGCGCTAAAAAGAGCCGTTTTTTTTGACGGTGGAAAAGCCGAATAATCTTCCACATCACAACAGAAGCGATAACATTCAc > 2:191426/1‑251 (MQ=255) gttatgGGAACCAGTGTGATGGTGGTGGGGCTGTCCGGCATGATGTTTGTGACTCGTAAATTCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGAtggt < 2:89709/247‑1 (MQ=255) ggAACCAGTGTGCTGGAGGTGGCGCCGGCCGGCATGATGTTTGGGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTAAAATGGACGATCAATTACGAATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAACAAGCGCCGTTTTTTTTGTCGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAAACTTCACCGTGGATGGGGGCgat > 1:308714/1‑251 (MQ=255) cAGTGTGCGTGTGGTGGCGCTGGCCGGCATGATGTTTTTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGAttt < 1:356645/251‑1 (MQ=255) cGTAATATCGACTGGGATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGAGCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGACGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATAcggcg < 1:172394/251‑1 (MQ=255) agaagTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAATCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACATAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGTCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCTCGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGCCGGTCa < 1:369281/251‑1 (MQ=255) aCAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGCCGGTCATTttctt > 1:101707/1‑251 (MQ=255) | GGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTT > NC_000913/4639255‑4639748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |