| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,638,567 | A→G | E130E (GAA→GAG) | creD → | putative inner membrane protein CreD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,638,567 | 0 | A | G | 90.3% | 67.4 / 0.6 | 33 | E130E (GAA→GAG) | creD | putative inner membrane protein CreD |
| Reads supporting (aligned to +/- strand): ref base A (2/1); new base G (17/11); total (19/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.33e-01 | |||||||||||
AGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTATCCATTTTTGGTTACCTGAGTCATTGATGGTTGATGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGTTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAACTCAACGCGCCAAATATCACCTTAGGCAAGCCATTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCTGAAGGGGACTGGCGGAAGCAGAACC‑TGAAGCTGAATATGGCCCTGAATTTAAGCGGTACCGGCGATCTTTCTGT > NC_000913/4638325‑4638809 | cggtgtccGCAAAAACTCGGTTGGCCGTTTTGCGCTATTCCTTTGTCTGAGCGTTATACGGTTCAGGAAGAGGATAAAACTGTGGTGCTGAAACGAAGTTTTATCCATTTTTGGTTACCTTAGTCAGTGATTGTTGATGGCATTCAGAACGTGGAAGAACGCAAGATAGCGACTTATGCCGGTCAGGTCTTTCTTAGTGCTTTAACGCTAAAAGTTGATTTAGATTTTTCGCGTCTTTGCGATCTCAAcgt < 2:127580/245‑2 (MQ=255) aCTCGTTGGGCCGCTTATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTATCCATTTTTGGTTACCTGAGTCATTGATGGTTGATGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCatct > 1:193414/1‑248 (MQ=255) tCGTTGGGCAGCTTATCGCTATTCCTGTGACCGCGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTATCCATTTTTGGTTACGTGAGTCATTGATGGTTGAGGGATATCAGAACGTGGATGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCTATTACGATGTTTCGCGTCTTAGCGGGCTCAACGCGCAAAATATCATCtt > 2:93614/1‑250 (MQ=255) tGGGCCGCTTATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTATCCATTTTTGGTTACCTGAGTCATTGATGGTTGATGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGc > 1:328199/1‑250 (MQ=255) ataCGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTATCCATTTTTGGTTACCTGAGTCATTGATGGTTGATGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGcgcg < 1:308408/250‑1 (MQ=255) aCGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTATCCATTTTTGGTTACCTGAGTCATTGATGGTTGAGGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTg < 1:8672/250‑1 (MQ=255) agagGATAAAACCGTGGAGCGGAAACGAAGTTTTATCCATTTTTGGTTACCTGAGTCATTGATGGTTGATGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATtggtgtgg > 1:251194/1‑251 (MQ=255) aaaaCCGTGGAGCGGAAACGAAGTTTTATCCATTTTTGGTTACCTGAGTCATTGATGGTTGATGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTGTTGTGATTAGCGTCGGGGATGCGCGTGGTAGTGGTGTGGTGAAAg < 1:135621/250‑1 (MQ=255) ggAAACGAAGTTTTATCCATTTTTGGTTACCTGAGTCATTGATGGTTGATGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTaac > 1:58784/1‑251 (MQ=255) ccagttgtGGTTGCCTGAGTCATTGATTGTTGATGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGGCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGAcc < 2:378130/243‑1 (MQ=255) gTTACCTGAGTCATTGATGGTTGATGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCg < 1:100345/251‑1 (MQ=255) cTGAGTCATTGATGGTTGATGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCAcc > 1:58432/1‑251 (MQ=255) tGAGTCATTGATGGTTAATGGCCATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTAGCACAGGGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCAAAATATCATCTTAGGCAAGCCCTTTATTGTAATTAGCGTCGGGGATACGCGAGGTATTGGTGTGGTGAAAGCGCATGAAGTTAACAGAACGGGGCTGaaattttaagccggcgccg > 2:250878/1‑233 (MQ=255) gatggCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCgg < 1:369332/251‑1 (MQ=255) atggCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTAAGGTCTGGCACAGTGATTTACCGCTAAACGCCGATTTAGATGTTTCGAGTCTTAGCGAGCTCAACGCGCCACATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGGGGAGGAAGCGCCTGAAATTAACGGAACGGCGCCGACGATTTAACCCGGCACCGGGGTAGAGCAAAGCggg > 2:384838/1‑251 (MQ=255) aaTCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAggg > 1:230212/1‑251 (MQ=255) aCGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGAGCCAAATATCATCTTAGGCAAGACCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTCTTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGAGATGACCATTGCACCCGACACCGGTTTAGAGCCAGGCGGGCAggggggggat > 2:259013/1‑244 (MQ=255) cAAGTTAGTGATTTATGCCGGTCAGGTCTGGTACAGTGATTTAACGCTAAAAACTGAGTTCGATGTTTCGCGTCTTAGCGAGCTCAACTCGCCAAATATCATCTTAGGCAAGCCCCTTATTGTGATTATCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCGGAAGTTAACGGAACTGCGCTGACCATTGAACCCGGCTCCGGGTTAGAGCAAGGCTGGCAGGGCGTGCATATCCCttttcccg < 2:102508/251‑6 (MQ=255) aGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCCGAAgggg < 1:195437/251‑1 (MQ=255) cTGGCACAGTGATTTAACGCTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCCGAAGGGGACTGGCGGAAGCAGAACC‑Tg > 1:258279/1‑250 (MQ=255) aTTTAACGTTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAACTCAACGCGCCAAATATCACCTTAGGCAAGCCATTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCTGAAGGGGACTGGCGGAAGCCGAACC‑TGAAGCTGAATATg > 1:210066/1‑251 (MQ=255) aaCGCTAAAAGCCGATTTCTATGTGTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCATGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCCGAAGGGGACTGGCGGAAGCAGAACC‑TGAAGCTGAatattgcac < 2:58784/251‑6 (MQ=255) cactAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGTAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGACAGGGGGTGCATATCCCTTTA‑CCCGAAGGAGAACGGCGGAAACAGaaacagacaattgaaatgctccc > 1:219066/4‑229 (MQ=255) ctAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGCAGTTAACGGAACGGCGCTGACCCTTGACCCCGGCACCGGGTTAGAGCAAGGCGGGAAGGGAGAGCATATCCCTTTA‑CCCGAAGGGGACCGGCGGGAGCAGGATC‑TGGAGCTggaaatgggcatgac > 2:22136/2‑237 (MQ=255) ctAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCCGAAGGGGACTGGCGGAAGCAGGACC‑CAAAGCTGAATATGGCCCTGa > 1:74445/2‑250 (MQ=255) aTTTCGATGTTTCGCGTCTTAGCGAACTCAACGCGCCAAATATCACCTTAGGCAAGCCATTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCTGAAGGGGACTGGCGGAAGCAGAACC‑TGAAg < 1:166537/224‑1 (MQ=255) ttctaTGTTTCGCGTCTTAGCTATCCCATCGCGTCAAATATCAGCTTAGGCTTTTCCTTTTGTGTGATTAGCGTCGGGGATGCGCGTGGTATTGTTGTGGTGAAAGCGCCCGAAGTTAACGGAACGGCGCTTACCATTGAACTCGGCGCCGGGTTAGAGCAAGGCTGGCTGGGCGTTCATATCTCTTTATCCT‑AAGGGGACTGGCGTAAGCAGATCT‑TGAAGCGGAATATGGCTCTGAATTTaggtgata < 2:346976/246‑8 (MQ=255) ttCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCCGAAGGGGACTGGCGGAAGCAGAAAC‑TGGAGCTGGATAAGGCCCTGAATTTAAgggggac > 1:292915/1‑245 (MQ=255) tCGATGTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCCGAAGGGGACTGGCGGAAGCAGAAAC‑TGAAGCTGAATATGGCCCTGAATTTAAGCgggaac > 1:318478/1‑247 (MQ=255) gTTTCGCGTCTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCCGAAGGGGACTGGCGGAAGCAGAACC‑TGAAGCTGAATATGGCCCTGAATTTAAGCGGTACCGGCg < 1:259013/250‑1 (MQ=255) cttCTTAGCGAGCACAACGCGCCAAATATCATCTTAGGCAAGCTCTTTATTGTGATTAGCTTCGGGGATGCTCGAGGTATTGGCGTGTTGAAAGCGCCGGAAGTTAACGGATCGGCGCTGTCCATTGAACCCGGCTCCTGTTTAGAGCAAGGCGGGCAGGGCGTGCATAGCCCTTTC‑CCCGGAGTGGACTGGCGGAAGCAGTACC‑TTAAGCTGAATATGGCCCTGAATTTAAGCGGTACCTGTGATCtt < 2:228434/247‑1 (MQ=255) gTCTCAGCGAACTCAACGCGCCAAATATCACCTTAGGCAAGCCATTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCCTATCCCTTTA‑CCTGAAGGGGACTGGCGGGAGCAGGACCATGA‑GCTGGATATGGCCCTGGATTTTAGCGGGACCAGCGGTCttttt > 2:189292/1‑249 (MQ=255) cTTAGCGAGCTCAACGCGCCAAATATCATCTTAGGCAAGCCCTTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCCGAAGGGGACTGGCGGAAGCAGAACC‑TGAAGCTGAATATGGCCCCGAATTTTAGCGGTACCGGCGATCTTTCtgt > 1:179235/1‑251 (MQ=255) | AGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTATCCATTTTTGGTTACCTGAGTCATTGATGGTTGATGGCAATCAGAACGTGGAAGAACGCAAGATAGGGATTTATACCGGTCAGGTCTGGCACAGTGATTTAACGTTAAAAGCCGATTTCGATGTTTCGCGTCTTAGCGAACTCAACGCGCCAAATATCACCTTAGGCAAGCCATTTATTGTGATTAGCGTCGGGGATGCGCGTGGTATTGGTGTGGTGAAAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTA‑CCTGAAGGGGACTGGCGGAAGCAGAACC‑TGAAGCTGAATATGGCCCTGAATTTAAGCGGTACCGGCGATCTTTCTGT > NC_000913/4638325‑4638809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |