| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,638,142 | T→C | intergenic (+22/‑36) | creC → / → creD | sensory histidine kinase CreC/putative inner membrane protein CreD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,638,142 | 0 | T | C | 93.5% | 82.8 / ‑3.6 | 31 | intergenic (+22/‑36) | creC/creD | sensory histidine kinase CreC/putative inner membrane protein CreD |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (14/15); total (16/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.84e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.44e-01 | |||||||||||
AGGTGCTGGATACCGGTAGTGGTATTCCTGACTACGCGCTTTCACGTATTTTTGAACGCTTTTACTCTTTGCCTCGTGCAAATGGGCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGG > NC_000913/4637903‑4638347 | aGGTGCTGGATACCGGTAGTGGTATTCCTGACTACGCGCTGTCACGTATTTTTGAACGCTTTTACTCTTTGCCGCGTGCAAATGGGCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCct > 1:30363/1‑251 (MQ=255) gtgggttgccgttAGTGGTTTTCCTGACTTCGAGTTGTCACATATGTGTTAACGTTTTTATTCTTTGCCGCGTGCAAATGGGCAAAAAAGCAGCGTTCTGGGGTTGGTGTTCTGCAGTGAGGGCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACTTGCAGGAAGGTGGCTTG‑CTGGCCACGCTTCGACGTCACCGTCACGTCACATAGCCCCAAATTCTTCCCACATAGCCTTCGTATCctgct < 2:274589/238‑1 (MQ=255) tGGATACCGGTAGTGGTATTCCTGACTACGCGCTGTCACGTATTTTTGAACGCTTTTACTCTTTGCCGCGGGCAAATGGGCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGCGGTCGCCAGTTTGTTTAACGGCGGAGTCACGCTGCGCAACGAGCAGGAAGGTGGAGTG‑CGGGCCTCGCTTCGACTTCACCGTCACTTCACAGAGCTTCACATTCTTCACACATAGCCTTCGAATACTGCTGcc > 2:308408/1‑251 (MQ=255) atcGGTAGTGGTATTCCTGACTTCGCGCGGTCACTTATTGTTGAACGCTTTTACTTTTTGCCGCGTGCAAATGGGCAAAAATGCAGCTGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCCGGAAGGTGGCGTG‑CTTGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTg < 2:352194/248‑1 (MQ=255) aGTGGTATTCCTGACTACGCGCTGTCACGTATTTTTGAACGCTTTTACTCTTTGCCGCGTGCAAATGGGCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATACTGCTGCCATTGCAAAgg > 1:249687/1‑250 (MQ=255) tATTCCTGACTACGCGCTGTCACGTATTTTTGAACGCTTTTACTCTTTGCCGCGTGCAAATGGGCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGagaagc > 1:337907/1‑250 (MQ=255) cgcTGTCACGTATTTTTGAACGCTTTTACTCTTTGCCGCGTGCAAATGGGCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGCAATcc > 1:258411/1‑251 (MQ=255) ttgtACTCTTTGCCGCGTTCAAAGGGGCAAAAAAGCAGCGGGCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGTGCAACGTGCAGGAAGGTGTCGTG‑CTGGCCTCGCGTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGaaaagtacca < 2:276361/247‑7 (MQ=255) ctTTGCCGCGTGCAAATGGGCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGAccaccttgttt > 1:183566/1‑241 (MQ=255) cAAATGGGCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTg < 2:124769/251‑1 (MQ=255) ggtcAAAAAAGCAGCGGACTGGGGTTAGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTGACGCTGCGCCACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTAAACGTCACTTCACATAGCATCCAATTCTTCCCACATAGCCTTCGTCTCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAACATGATCACCTTG‑TTTGGTGCAGTATTTCtgtt > 2:268299/4‑251 (MQ=255) ggCAAAAAAGCAGCGGTCTGGGGGTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATGCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCtgttg < 2:108942/251‑1 (MQ=255) gCAAAAAAGCAGCGGTCTGGGGTTGTCGTTCGTCAGCGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCtgttgt > 1:118317/1‑251 (MQ=255) tctgTCTGGTGTTAGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGAGTG‑CTGGCATCGCTTCGACTTAACCGTCACTTCACATAGCTTCAAATTATTCCCACATAGCCTTCGTATCATGCTGCCCTTGCAAAGGTGATGACTATGTTTAGTTCCCCCCTGTTCTGGAAAAGGACCACATTG‑TTTGGTGCAGTCTTGCTGATGTTGGTTCCGAt > 2:120951/4‑250 (MQ=255) gTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTACCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATg < 1:147970/251‑1 (MQ=255) tGGGGTTGGCGTTTGTCAGGGAGGTCTCCCGTTGGTGTAACGGGGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCCCATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCt < 2:10534/250‑1 (MQ=255) cGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCa > 1:291620/1‑250 (MQ=255) ggctgTCAGTGAGGTCTCTCGTTTGTGTAACGGCGAAGTCACGCTGGGCAACGTGCAGGAATGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGTCTATGTTGAAATCCCCCCGGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGGTGTTGATTCCGATAATGCTGATTCGGCaag < 2:47727/247‑3 (MQ=255) gTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAAGTGATTGTc < 1:229590/251‑1 (MQ=255) cGTTTGTTTAACGACGAAGTCACGCTGCGCAACGTGCAGGAAGGCGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGCGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCAACTTG‑TTTGTTACAGAATTTCTGTTGTTGATTACGTTAATGCTGTTTCGCCACAGGATTGTCTAACGTGcggt > 2:195437/1‑248 (MQ=255) gtttgtttAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAAGTGATTGTCGAACGTGCCGAt > 1:229827/1‑251 (MQ=255) tttgtttAACGGCGAAGTCACGCTGCGCAACGTGCCGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAAGTGATTGTCGAACGTGCCGAtt > 1:102508/1‑251 (MQ=255) cGGCGAAGTCACGTTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTG‑TTTGGTGCAGTATTGCTGTTGTTAATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCg > 1:279275/1‑251 (MQ=255) cGGCGAAGTCACGCTGCGCAACGGGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCATCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAAGTGATTGTCGAACGTGCCGATTACCGTAGCg < 1:69904/251‑1 (MQ=255) gtgAAGTCACTCTGCGCAACGTGCAGGAAGGTGGC‑TGTCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCGTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑GTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAAGTGATTGTCGAACGTGCCGATTACCGTAGCGAt < 2:337907/249‑1 (MQ=255) gTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAAGTGATTGTCGAACGTGCCGATTACCGTAGCGATGTGGAAGATGCGATTCGcc > 1:161739/1‑250 (MQ=255) aGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAAGTGATTGTCGAACGTGCCGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGt < 1:203529/251‑1 (MQ=255) ggttgCGTG‑CTGGCCTCGCTTCGACTTCACCGTTACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAAGTGATTGTCGAACGTGCCGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAg < 1:7864/247‑1 (MQ=255) ggTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAAGTGATTGTCGAACGTGCCGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTAcc > 1:344765/1‑249 (MQ=255) gtttcaccgtctccGTCACTTCCTATAGCTTCAAATTCTTCCCAAATAGCCTGCGTATCCTGTTGCAATTTTAAAGGAGGTGACGATGTTGAAATCCCCCCTGTTCTGGAAAATGTCCA‑CCTGGTTTGGTGCAGTATTGCTGTTGTTTATTCCGATAATGCTGATTCTGCAAGTGATTGTCGAACGTGCCGATTACCGTAGAGATGTTGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCACAATCTCg < 2:211660/239‑1 (MQ=255) cGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGCCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACCACCTTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAAGTGATTGTCGAACGTGCCGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTgg < 1:314782/251‑1 (MQ=255) | AGGTGCTGGATACCGGTAGTGGTATTCCTGACTACGCGCTTTCACGTATTTTTGAACGCTTTTACTCTTTGCCTCGTGCAAATGGGCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTG‑CTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTG‑TTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGG > NC_000913/4637903‑4638347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |