| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,637,697 | C→T | F334F (TTC→TTT) | creC → | sensory histidine kinase CreC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,637,697 | 0 | C | T | 94.3% | 87.7 / ‑4.4 | 35 | F334F (TTC→TTT) | creC | sensory histidine kinase CreC |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base T (13/20); total (13/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGCTGTTGATGTGGCGGCATTATTCCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAAAATCACTCTGCATGTTACGCCCACCGAGGTTAACGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGAAATTTACTGGATAACGCCATCGATTTTACCCCCGAGAGCGGTTGCATCACGCTAAGCGCCGAAGTGGATCAGGAACACGTCACGCTTAAGGTGCTGGATACCGGTAGTGGTATTCCTGACTACG > NC_000913/4637452‑4637938 | aaaaaCTATATTGAGCAGTATGTTTATACGTTAACCCATTAGCTAAAAAGCCCACTGGCGGCGATTCGTGGCGCGGTGGAAACTTTACGCGAAGGTACGCCTCCGGAAGTGGTGGCTCGTTTTACCTACAACATTCTGACTCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAATTCGTTCTGACTGTTGTTGATGTGTCGGCATTATTgcgccg < 2:265707/251‑1 (MQ=255) aaaaCTATATTGAGCAGTATGTTTATGCGTTAACCCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGCGCGGCGGAAATTTTACGCGAAGGTCCGCCACCGGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTcgccgc < 1:189215/251‑1 (MQ=255) aCTATATTGAGCAGTATGTTTATGCGTTAACCCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGCGCGGCGGAAATTTTACGCGAAGGTCCGCCACCGGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGGGAATCATAAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTc > 1:377362/1‑251 (MQ=255) gAGCAGTATGTTTATGCGTTAACCCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGCGCGGCGGAAATTTTACGCGAAGGTCCGCCACCGGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAg < 1:247743/250‑1 (MQ=255) gTTTATGCGTTAACCCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGCGCGGCGGAAATTTTACGCGAAGGTCCGCCACCGGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCgg > 1:211660/1‑250 (MQ=255) tatgcgttAACCCATGAGCTAAAAAGCCCACTGGCGGCGATGCGTGTCGCGGCGGAAATTTTTCGCGAAGGTCCGCCACCTGAAGTGGTGGCTCGTTTTACCTACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGGTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTGGATGTGGCTGCATTATTTCGCCGCGTCAGCGaggctctatccgtgc < 2:157051/244‑15 (MQ=255) tACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGTAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGGAGAGGGGGCGCGTTTTACTGGCAACATTCTGACGCAAAAAGCGCGTGTGCAGGCGTTGGTAGGAACCGTACTACGCCAGGCCAGACTGGGGAACCGTCAGGAAGTCGTTCTGACTGCTGATGATCTGGCAGCCTTTTTTCGCCGCGTCAGGGATGCGCGCAcccggcc > 2:59037/1‑246 (MQ=255) tgcgttAACCCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGCGCGGCGGAAATTTTACGCGAAGGTCCGCCACCGGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATAGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTTGCCGCGTCAGCGAAGCGCGCACCGTGCAGt > 1:247325/5‑251 (MQ=255) cTAAAAAGCCCACTGGCGGCGATTCGTGGCGCGGCGGAAATTTTACGCGAAGGTCCGCCACCGGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGTCTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGGTGGCAGaaaaaaacat > 1:236118/1‑248 (MQ=255) aaaaaGCCCACGTGCGGTGATTCGTGGCGCGGCGGAAATTTTACGCGAAGGGCCGCCACCGGTAGTGGTGGCGCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGaaaaaaacat < 2:120724/249‑4 (MQ=255) aagcccgcggggggcgATTCGGGGCGCGGCGGAAATTTTACGCGAATGTCCGCCACTGGAAGTGGTGGCTCGTTTTACCGACTACATTCCGACGCAAAAGTCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGATTTCGTTCGGACTGTTGTTGATGGGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCCCCGGTCAGTTGGCAGAAAAAAACATCActc < 2:363832/239‑1 (MQ=255) aaGCCCACTGGCGGCGATTCGTGGCGCGGCGGAAATTTTACGCGAAGGTCCGCCACCGGAAGCGGTGGCTCGTTTTACCAACAACATTCTGACGCAAAATGCGCGTCTGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTCTTTCGCCGCGTCAGCGAAACGCGCACCGTGCAGTTGGCAGAAAAAAACATCActc > 1:54977/1‑251 (MQ=255) ccTGGCGGCGATTCGTGGCGCAGCGGAAACTTTACGCGAAGGTCCGACACCGGAAGTGGTGGCTCGGTTTACCGACAACAGTCTGACGCAAAATGCGTGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGATTCGTCAGGAAGCCGTTCTGACTGTTGTTGATGTGGCGGCAGTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCTGTTGGCAGaaacatactgcacaatatagt < 2:377362/250‑19 (MQ=255) ggcggcGATTCGTGGCGCGGCGGAAATTTTACGCGAAGGTCCGCCACCGGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGtt < 1:354095/250‑1 (MQ=255) gTGGAGCTGCGGAAATTTTACTCGAATGTACGCCACCGGAGTTTGTGGCTCGTTTTACCGACAACTTTCTGACGCAAAAGGCGCGTATGCAGGCATTGGTAGAAACGTTTCTACGCCAGGCAAGACTGTAGAATCGTCAGGATGTCGTTCTGACTGTTGTTGATTTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTTCATGTTTTGCCCACTGAg < 2:355470/251‑1 (MQ=255) gcggcgGAAATTTTACGCGAAGGTCCGCCACCGGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGGTGGCAGAAAAAAACATCACTCTACATGTTATGCCCCCTGAGGTTa > 1:186163/1‑250 (MQ=255) gcggAAATTTTACGCGAAGGTCCGCCACCGGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTaatgt < 1:348469/251‑4 (MQ=255) aaTTTTACGCGAAGGTCCGCCACCGGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTtgctg < 1:122151/251‑1 (MQ=255) ccgccaccgGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACt < 2:142323/251‑1 (MQ=255) gccaccgGAAGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTgg > 1:274589/5‑251 (MQ=255) aaGTGGTGTCTCGGTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGGTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGgcg < 1:171859/251‑1 (MQ=255) aaGTGGTGGCTCGTTTTACCGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGgcg > 1:276361/1‑251 (MQ=255) ggtggCTCGTTTTACTGACAACATTCTGCCGCAAAATGCGCGGTTGCAGGCATTGGTAGAAACGTTACTATGCCATGCAAGACGGGAGAATCGTCAGGAAGTCGTTCTGACTGCTGTTGATGTGGCGGCATTATTCCGCCGCGTCAGCGATGCGCGCACCGTGCAGTTGGCAGAAAAAAAAATCACGCTGCATGTTACGCCCACCGAGGTTAACGTTGCTGCTGAACCGGCGTTTCTTGAGCAGGCGCTgg < 2:198925/251‑1 (MQ=255) agTTTTACCGACAACATTCAGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGTAAGACCGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGTGAAGCGCTCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACCGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGGAAttt < 1:371520/250‑1 (MQ=255) aTTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGTAGCAGGCGCTGGGGAATTTACTGGATAACGCCAt < 1:120509/251‑1 (MQ=255) tCTGCCGCAAAATGCGCGGATGCAGGTATTGGCTGAAACGTTCCTACGCTATGCAAGACTGGAGACTCTTCATGAAGTTGTTCTGACTGCTGCTGATGTGGAGGCATTATCCCGCCGCGTCTGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAAAACCACTCTGCAGGTTTCGCCCACCGAGGTTAACGCTGCTGCTGAACCTGCGTTACTGGCTCAGGCGCTGGGAAATTTAATGGATAACGTCATc < 2:99140/250‑1 (MQ=255) cTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGCCTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTTCCCGCGTCTGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAAAATCACTCTCCATGTTATGCCAACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGGAATTTCCTGGTTAACCCCATCg > 1:22941/1‑250 (MQ=255) aaaTGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGGAATTTACTGGATAACGCCATCGATTTTAccc > 1:47727/1‑251 (MQ=255) aTGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGGAATTTACTGGATAACGCCATCGATTTTAccccc < 1:3141/251‑1 (MQ=255) cAGGCATTGGGAGCAACGTTCCTACTCCAGGCAAGCCTGTAGAATCGTCCGGAAGTCTTTCTGCCTGTTGTTGATGTGGCGGCATTAGTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGGAATTTGCTTGATAACGCCATCGATTTTACCCCCGAGATCGGtc < 2:315553/250‑2 (MQ=255) gCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGGAATTTACTGGATAACGCCATCGATTTTACCCCCGAGAGCGGTCGCAt < 1:209287/251‑1 (MQ=255) gTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGGAATTTACTGGATAACGCCATCGATTTTACCCCCGAGAGCGGTCGCATAACGCt < 1:197893/251‑1 (MQ=255) cGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGGAATTTACTGGATAACGCCATCGATTTTACCCCCGAGAGCGGTCGCATAACGCTAAGCGCCGAAGTGGa < 1:41988/251‑1 (MQ=255) ccAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGGAATTTACTGGATAACGCCATCGATTTTACCCCCGAGAGCGGTCGCATAACGCTAAGCGCCGAAGTgggtc > 1:104248/1‑248 (MQ=255) tGACTGTTGTTGATGTGGCGGCATTATTTCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAACATCACTCTACATGTTATGCCCACTGAGGTTAATGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGGAATTTACTGGATAACGCCATCGATTTTACCCCCGAGAGCGGTCGCATAACGCTAAGCGCCGAAGTGGATCAGGAACACGTCGCCCTTAAGGTGCTGGATACCGGt > 1:202727/1‑251 (MQ=255) ggcATTATTTCGCCGCGGCAGCGAATCGATCACCGTGCAGTTGGCAGAAAAAAATATCCCTTTACATGTTATGCCCTCTGAGGTTAATTTTGATGCTGAACCGGCTTTACTGGAGCAGGCGCTGGGGAATTTACTGGATAACGCCATCGATTTTACCCCCGAGAGCGGTCGCATAACGCTAAGCGCCGAAGTGGATCAGGAACACGTCTCCCTTAAGGTGCTGTAGACCGGTAGTGGTATTCCTGACTAcg < 2:63590/251‑1 (MQ=255) | AAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATCGTCAGGAAGTCGTTCTGACTGCTGTTGATGTGGCGGCATTATTCCGCCGCGTCAGCGAAGCGCGCACCGTGCAGTTGGCAGAAAAAAAAATCACTCTGCATGTTACGCCCACCGAGGTTAACGTTGCTGCTGAACCGGCGTTACTGGAGCAGGCGCTGGGAAATTTACTGGATAACGCCATCGATTTTACCCCCGAGAGCGGTTGCATCACGCTAAGCGCCGAAGTGGATCAGGAACACGTCACGCTTAAGGTGCTGGATACCGGTAGTGGTATTCCTGACTACG > NC_000913/4637452‑4637938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |