Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,635,889 T→C D123D (GAT→GAC creA → PF05981 family protein CreA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,635,8890TC97.1% 86.6 / ‑4.3 34D123D (GAT→GACcreAPF05981 family protein CreA
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (17/16);  total (18/16)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.01e-01

TTGATGATCCCGATGTGAAAAATGTCACCTGTTATGTGAGCCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGCCGTCGAGGTCTTTGAGCGAGGCTTGCCGGTGCTGGATA  >  NC_000913/4635654‑4636130
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                  
ttGACGATCCCGATGTGAATAATGTCAACAGTTAAGTGAGCCGGGCGAAAACAGGTGGTATTAAAGGGGGATTGGGTTTGGCGGAATATACCTCCGATGCTGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGGCGTGCGCTTTTATGACGCCAaacgcaacgc                                                                                                                                                                                                                                      <  2:41117/250‑1 (MQ=255)
 tgacgatCCCGATGTGAAAAATGTCCCCTGTTATGTGAGCCGGGCGAAAACAGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCTATTTCTTGTCAGCAAGTCGTGCCGATTGAACTGTCGGATCGTATTAAAAACGTCAAAGCTCAGGTCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGTTCGTGCGCTTTTATGACGCCAAACGCAAcgcg                                                                                                                                                                                                                                     <  1:155492/246‑1 (MQ=255)
                                      aGCCGGGCGAAAACAGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAgg                                                                                                                                                                                              >  1:33071/1‑251 (MQ=255)
                                        ccGGGCGAAACCAGGTGGTATTAAAGGTGGATTGGGTCTGGCGGAAGATACCTCAGATGCGGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGCGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTAATCTGGCTTAATCCGACAAAGTTGtgtaagggt                                                                                                                                                                                            >  2:148652/1‑243 (MQ=255)
                                            gCGAAAACAGGTGGTATTAAAGGGGGATTTGGTCTGGCGGAAGATACCTCCGATGCGGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGcc                                                                                                                                                                                        <  1:204809/251‑1 (MQ=255)
                                                  acagagggtATTAAGTGGGTATTGGGTCGGGCGGAAGATTCCTACGATGAGTCGATATCATGTCAGGAAGTCGGGCCTATGTAATTGTCGGAGCGTATTAAAAACGGCAAAGCTCAGGACGAGGGAGTAGTCAAAAAACGCACGTCACTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTGTATGACGTCAAACGCAGCGCGCTCGATAATCTGGCTTACTCCGACAAAGTTGTATAAGTTTCGCCGaaaaa                                                                                                                                                                                  <  2:117753/245‑1 (MQ=255)
                                                                              tGGCGGAAGATACCTCCGATGCGGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTATCGCGGTTCCTGTCATGCCg                                                                                                                                                      >  2:274046/1‑251 (MQ=255)
                                                                                          ccTCCGATGCGGCCGTTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAGACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGAACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGTAGGTTCACCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCaaaa                                                                                                                                           >  2:143261/1‑248 (MQ=255)
                                                                                               gATGCGGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACagag                                                                                                                                     <  1:285272/251‑1 (MQ=255)
                                                                                                   cggctatttcaggTCAGCAAGTCGAGCCGATTGAACGGTCGGATCGTATTAAAAACGGCAAAGCGCAGGGCGAGGTAGTATGCAAAAAACGCACGTCCCTGGTCTGTAAGTCGTTACAGTTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCGTAGCTGGCTTACGCCGACAAAGTTGTAGAAGGTTCTCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGa                                                                                                                                 <  2:353354/239‑1 (MQ=255)
                                                                                                          ttCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAACCGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAACCGCGATTAGCGCGGTTCCTGTCTTGCCGTGGCGGCAATAACAGAGGCGTTTTATGc                                                                                                                          >  2:128164/1‑251 (MQ=255)
                                                                                                                      aGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGACATAACAGAGGAGATTTATgcaacgggcaacgg                                                                                                              >  2:165746/1‑251 (MQ=255)
                                                                                                                           ggCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGGGGCGGCCATAACAGAGGCGATTTATGCAACGGGAACCGGTGTgg                                                                                                         >  2:167327/1‑251 (MQ=255)
                                                                                                                                 ttGAACTGTCGGATCGTATTAAAAACGGCAAAGATCAGGGCGAGGTAGTATTCACAAAATGCAAGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAATGCGCTCGCTGATCTGGCTTACTCCGACAAGTGTGTAGAAGGATCGCCGAAAAACGAGATTAGCGCGGTTCCTGTTAGGCCGTGGCTGGAATAACAGACGCGCTTTCAGCAACGGGAACCgggatgggtcgtg                                                                                                   >  2:279421/1‑240 (MQ=255)
                                                                                                                                     aCTGTCGGATCGTAGGAAAGCAGGCAACGCTCAGGGCGCGGTAGAATTCAAAAAAAGCACGTCCCTGGTATTTAAGTCGTTACAGGACGTGCGCTTTTATGCCGCCAAACGCAACGCGCACGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCAGAAAAACGCGAGTCTCGCGGTTCATGTCATGCCGTAGCGGCACTTAAAGAAGCGATTTATGCCAGAGGAAAAGGTCTGGtaggttgat                                                                                                >  2:218150/1‑242 (MQ=255)
                                                                                                                                       tGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCgg                                                                                                                                                                    <  1:288422/180‑1 (MQ=255)
                                                                                                                                            gctCGTATTAAAAACGGAAAAGCTCAGGGCGAGGTAGTATTCACAAAACGCACCTCCCTGGTCTATAAACCGTTACAGGACGTGCGCTTTTATGACGCCAAACGCAACGCGATCGCTTATATGACTTACTCCGACAAAGTTGTAGAAGATTCGCCGAAAAACGAGCTTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAAAAAAGGCGCTTTATACAACTGGAAACGGGCTGGTGAGTggtaggtggga                                                                                         >  2:373323/3‑241 (MQ=255)
                                                                                                                                                      aaaaCGGCAAATCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGcc                                                                              <  1:335084/251‑1 (MQ=255)
                                                                                                                                                        aaCGGGAAAGCTCAGGGCGAGGTAGGATGCAAAAAACGCCCGGCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGTCAAACGCAACGCGCTCGCTTACCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGa                                                                            <  2:78063/251‑1 (MQ=255)
                                                                                                                                                           ggCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGGTAGTGGAAGATGAGCAAGGGATAGCCGacac                                                                         >  1:332323/1‑251 (MQ=255)
                                                                                                                                                              aaaGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCt                                                                      <  1:268075/251‑1 (MQ=255)
                                                                                                                                                                  cccAGGGCGAGTTAGTATGCAAAAAGCGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCGTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAATGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATGTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTc                                                                  <  2:137477/249‑1 (MQ=255)
                                                                                                                                                                           aGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTTTGCAACGGGGAACGGTCTGGTTATTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCttactgttg                                                         >  2:67820/1‑243 (MQ=255)
                                                                                                                                                                             gtagtaTTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTgc                                                        >  1:157901/1‑250 (MQ=255)
                                                                                                                                                                               agtaTTCAAAAAACGCACGTCCCTGGACTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTgaagc                                                     >  1:112833/1‑251 (MQ=255)
                                                                                                                                                                                          aaCGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCACAGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACAAGATGGTCTACATGTTGAAGCAGGAAGGgttt                                          >  2:309708/1‑251 (MQ=255)
                                                                                                                                                                                           aCGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTg                                         <  1:167327/251‑1 (MQ=255)
                                                                                                                                                                                             gCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGcc                                       >  1:150012/1‑251 (MQ=255)
                                                                                                                                                                                                   cccTGGGCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGCCGTCGa                                  <  1:201809/250‑1 (MQ=255)
                                                                                                                                                                                                      tGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGCCGTCGAGGTc                              >  1:203734/1‑251 (MQ=255)
                                                                                                                                                                                                                gTCGTTACTGGCCGTGGCCTTTTATGACGACAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCTATTAGCGCGGTTCCGGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTGAGTGGAAGAAGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCATGAAGGCTTTGCCGTCGAGGTCTTTGAGCGAg                    <  2:157901/251‑1 (MQ=255)
                                                                                                                                                                                                                  cGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGGTAGTGGAAGATGAGCAAGGGATAGCCGACCCGCTGGTCTAATTGTTGCAGCAGGAAGGTTTTGCCGTCGGGGTCTTTGAGCGAGGc                  >  2:20254/1‑251 (MQ=255)
                                                                                                                                                                                                                       cagttcattcgcTTTTATGACGCGAAACGCAACGCGCCCGCTTATCTGGCTTACTCCGACAAAGGTGTAGAAGGTTCGCCGAAAAACTCGATTTGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGTAAACGGTCTGGTTAGTGGAAGATGATCAAGGGATAGCCGGCACGCTGGTTTACATTTTGCAGCAGGAAGTTTTTGCCGTCGAGGTCTGTGAGCGAGGCTTGcc             <  2:227202/242‑1 (MQ=255)
                                                                                                                                                                                                                                    tttATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGCCGTCGAGGTCTTTGAGCGAGGCTTGCCGGTGCTGGATa  <  1:218150/249‑1 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                  
TTGATGATCCCGATGTGAAAAATGTCACCTGTTATGTGAGCCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGCCGTCGAGGTCTTTGAGCGAGGCTTGCCGGTGCTGGATA  >  NC_000913/4635654‑4636130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: