| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,635,889 | T→C | D123D (GAT→GAC) | creA → | PF05981 family protein CreA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,635,889 | 0 | T | C | 97.1% | 86.6 / ‑4.3 | 34 | D123D (GAT→GAC) | creA | PF05981 family protein CreA |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (17/16); total (18/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.01e-01 | |||||||||||
TTGATGATCCCGATGTGAAAAATGTCACCTGTTATGTGAGCCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGCCGTCGAGGTCTTTGAGCGAGGCTTGCCGGTGCTGGATA > NC_000913/4635654‑4636130 | ttGACGATCCCGATGTGAATAATGTCAACAGTTAAGTGAGCCGGGCGAAAACAGGTGGTATTAAAGGGGGATTGGGTTTGGCGGAATATACCTCCGATGCTGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGGCGTGCGCTTTTATGACGCCAaacgcaacgc < 2:41117/250‑1 (MQ=255) tgacgatCCCGATGTGAAAAATGTCCCCTGTTATGTGAGCCGGGCGAAAACAGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCTATTTCTTGTCAGCAAGTCGTGCCGATTGAACTGTCGGATCGTATTAAAAACGTCAAAGCTCAGGTCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGTTCGTGCGCTTTTATGACGCCAAACGCAAcgcg < 1:155492/246‑1 (MQ=255) aGCCGGGCGAAAACAGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAgg > 1:33071/1‑251 (MQ=255) ccGGGCGAAACCAGGTGGTATTAAAGGTGGATTGGGTCTGGCGGAAGATACCTCAGATGCGGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGCGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTAATCTGGCTTAATCCGACAAAGT‑TGtgtaagggt > 2:148652/1‑243 (MQ=255) gCGAAAACAGGTGGTATTAAAGGGGGATTTGGTCTGGCGGAAGATACCTCCGATGCGGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGcc < 1:204809/251‑1 (MQ=255) acagagggtATTAAGTGGGTATTGGGTCGGGCGGAAGATTCCTACGATGAGTCGATATCATGTCAGGAAGTCGGGCCTATGTAATTGTCGGAGCGTATTAAAAACGGCAAAGCTCAGGACGAGGGAGTAGTCAAAAAACGCACGTCACTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTGTATGACGTCAAACGCAGCGCGCTCGATAATCTGGCTTACTCCGACAAAGT‑TGTATAAGTTTCGCCGaaaaa < 2:117753/245‑1 (MQ=255) tGGCGGAAGATACCTCCGATGCGGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTATCGCGGTTCCTGTCATGCCg > 2:274046/1‑251 (MQ=255) ccTCCGATGCGGCCGTTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAGACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGAACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGTAGGTTCACCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCaaaa > 2:143261/1‑248 (MQ=255) gATGCGGCTATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACagag < 1:285272/251‑1 (MQ=255) cggctatttcaggTCAGCAAGTCGAGCCGATTGAACGGTCGGATCGTATTAAAAACGGCAAAGCGCAGGGCGAGGTAGTATGCAAAAAACGCACGTCCCTGGTCTGTAAGTCGTTACAGTTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCGTAGCTGGCTTACGCCGACAAAGT‑TGTAGAAGGTTCTCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGa < 2:353354/239‑1 (MQ=255) ttCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAACCGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAACCGCGATTAGCGCGGTTCCTGTCTTGCCGTGGCGGCAATAACAGAGGCGTTTTATGc > 2:128164/1‑251 (MQ=255) aGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGACATAACAGAGGAGATTTATgcaacgggcaacgg > 2:165746/1‑251 (MQ=255) ggCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGGGGCGGCCATAACAGAGGCGATTTATGCAACGGGAACCGGTGTgg > 2:167327/1‑251 (MQ=255) ttGAACTGTCGGATCGTATTAAAAACGGCAAAGATCAGGGCGAGGTAGTATTCACAAAATGCAAGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAATGCGCTCGCTGATCTGGCTTACTCCGACAA‑GTGTGTAGAAGGATCGCCGAAAAACGAGATTAGCGCGGTTCCTGTTAGGCCGTGGCTGGAATAACAGACGCGCTTTCAGCAACGGGAACCgggatgggtcgtg > 2:279421/1‑240 (MQ=255) aCTGTCGGATCGTAGGAAAGCAGGCAACGCTCAGGGCGCGGTAGAATTCAAAAAAAGCACGTCCCTGGTATTTAAGTCGTTACAGGACGTGCGCTTTTATGCCGCCAAACGCAACGCGCACGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCAGAAAAACGCGAGTCTCGCGGTTCATGTCATGCCGTAGCGGCACTTAAAGAAGCGATTTATGCCAGAGGAAAAGGTCTGGtaggttgat > 2:218150/1‑242 (MQ=255) tGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCgg < 1:288422/180‑1 (MQ=255) gctCGTATTAAAAACGGAAAAGCTCAGGGCGAGGTAGTATTCACAAAACGCACCTCCCTGGTCTATAAACCGTTACAGGACGTGCGCTTTTATGACGCCAAACGCAACGCGATCGCTTATATGACTTACTCCGACAAAGT‑TGTAGAAGATTCGCCGAAAAACGAGCTTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAAAAAAGGCGCTTTATACAACTGGAAACGGGCTGGTGAGTggtaggtggga > 2:373323/3‑241 (MQ=255) aaaaCGGCAAATCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGcc < 1:335084/251‑1 (MQ=255) aaCGGGAAAGCTCAGGGCGAGGTAGGATGCAAAAAACGCCCGGCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGTCAAACGCAACGCGCTCGCTTACCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGa < 2:78063/251‑1 (MQ=255) ggCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGGTAGTGGAAGATGAGCAAGGGATAGCCGacac > 1:332323/1‑251 (MQ=255) aaaGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCt < 1:268075/251‑1 (MQ=255) cccAGGGCGAGTTAGTATGCAAAAAGCGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCGTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAATGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATGTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTc < 2:137477/249‑1 (MQ=255) aGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTTTGCAACGGGGAACGGTCTGGTTATTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCttactgttg > 2:67820/1‑243 (MQ=255) gtagtaTTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTgc > 1:157901/1‑250 (MQ=255) agtaTTCAAAAAACGCACGTCCCTGGACTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTgaagc > 1:112833/1‑251 (MQ=255) aaCGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCACAGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACAAGATGGTCTACATGTTGAAGCAGGAAGGgttt > 2:309708/1‑251 (MQ=255) aCGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTg < 1:167327/251‑1 (MQ=255) gCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGcc > 1:150012/1‑251 (MQ=255) cccTGGGCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGCCGTCGa < 1:201809/250‑1 (MQ=255) tGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGCCGTCGAGGTc > 1:203734/1‑251 (MQ=255) gTCGTTACTGGCCGTGGCCTTTTATGACGACAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCTATTAGCGCGGTTCCGGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTGAGTGGAAGAAGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCATGAAGGCTTTGCCGTCGAGGTCTTTGAGCGAg < 2:157901/251‑1 (MQ=255) cGTTACAGGTCGTGCGCTTTTATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGGTAGTGGAAGATGAGCAAGGGATAGCCGACCCGCTGGTCTAATTGTTGCAGCAGGAAGGTTTTGCCGTCGGGGTCTTTGAGCGAGGc > 2:20254/1‑251 (MQ=255) cagttcattcgcTTTTATGACGCGAAACGCAACGCGCCCGCTTATCTGGCTTACTCCGACAAAGG‑TGTAGAAGGTTCGCCGAAAAACTCGATTTGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGTAAACGGTCTGGTTAGTGGAAGATGATCAAGGGATAGCCGGCACGCTGGTTTACATTTTGCAGCAGGAAGTTTTTGCCGTCGAGGTCTGTGAGCGAGGCTTGcc < 2:227202/242‑1 (MQ=255) tttATGACGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGCCGTCGAGGTCTTTGAGCGAGGCTTGCCGGTGCTGGATa < 1:218150/249‑1 (MQ=255) | TTGATGATCCCGATGTGAAAAATGTCACCTGTTATGTGAGCCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCCTGGTCTTTAAGTCGTTACAGGTCGTGCGCTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGT‑TGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCCGTGGCGGCAATAACAGAGGCGATTTATGCAACGGGAAACGGTCTGGTTAGTGGAAGATGAGCAAGGGATAGCCGACACGCTGGTCTACATGTTGCAGCAGGAAGGTTTTGCCGTCGAGGTCTTTGAGCGAGGCTTGCCGGTGCTGGATA > NC_000913/4635654‑4636130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |