| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,634,882 | C→T | Q143Q (CAG→CAA) | rob ← | DNA‑binding transcriptional dual regulator Rob |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,634,882 | 0 | C | T | 93.9% | 76.7 / ‑1.4 | 33 | Q143Q (CAG→CAA) | rob | DNA‑binding transcriptional dual regulator Rob |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (11/20); total (12/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.15e-01 | |||||||||||
CACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGATGTCCAGAATCGGACGCGCAGTCAGGCGTAG > NC_000913/4634636‑4635115 | cacaTATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGCACAGGAGTAGCTTTggg > 1:164203/1‑251 (MQ=255) ccTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGGAATCAAAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAgc > 1:58641/1‑251 (MQ=255) ccTGCAGAATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGACGGCGCGATGCCGCGAAAATCGTGCCAGAACAGATAAAGCCTTGACTGGCGGAAATCTGAGGTTTGCTCCAGCTCACAGGAGTATCTTTGGGtcaaccacaac > 2:311419/1‑238 (MQ=255) agcaTCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGt > 1:315/1‑251 (MQ=255) agcaTCACCGGATGACCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTTCAGAGAACAGGAGTAGCTTTGGGTAAACCCAATCAgcggctt > 1:317599/1‑249 (MQ=255) gTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTAGTCGGCATTATCCTGACTCGGACGCGGTTCATTCAGGCCGTAGAGCACCGGCTGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCAGTTCATGGCGGAAATCAGAGATGTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTtg < 2:22638/251‑1 (MQ=255) aTAGCCATCTGCCTGATCCTGGGCTAAAGCGGTGGTATAGACTACCTCTTGCTCGTCGTCTTTATACTGACTCGGACGAGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGACGGGAAAATCGGGCCAGACCTGATAACGCATTTCATGGCGGAAATCCGGGATTTGCTCCAGCGAGCCGGAGTAGCTTTGGGGCACACCACTCAGCGGCGTATCTGCCAGGGAGACCAATTTGTGct > 1:27862/1‑251 (MQ=255) aGCCATCTGCCGGTTCATGGTCTAACGCGGGGGTATAGAAGACCTCTTGCTCGGAGTTTTTATCCTGGATCGGGCGCGTTGCATTCAGGCCGTTGGGCACCGGCGGAATGGTCGGCGCGTGGCCGAGAAAATCGTGCGAGAACTGATAACGCATTTCATGGCGGAAATCAGAGAGGTGCTCCAGCGAACAGGAGTAGCGTGGGGGAACACCAATCAGTGGGGTAGCGTCGAGGGTGACAAAGTTGTGctct < 2:358174/251‑1 (MQ=255) ccTGAGCCTGGGCTAGCGCGGTGGTATAGTATACCTCTTGCTCGTCGGCTTTATCCTTACTCGGACGCGTTTCATTCAGGCCGTAGATCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTg < 2:32186/251‑1 (MQ=255) aTCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGGAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAAtt > 1:347081/1‑251 (MQ=255) gggCTAACGCGGTGGTATATAAGTCCGCTGGCTCGTCGTCTTTATCCTGACTCGGACGCGTGTCATGCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCCGAACGGATAACGCATATCAAGGCGGAATTCAGAGAGTTGTTTCGGCGAGCAGTAGTATCTTTGGGTAacac < 2:50653/192‑1 (MQ=255) gggCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTTCAGCGAACAGGAGTAGCTTTGGGTAacac > 1:50653/1‑192 (MQ=255) aaCGCAGTGGTATAGAATACCTCTTGACCGTCGACTTTATCCTGACACGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCCGAGGTTTGCTCCAGCGGACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGGGACAAATTTATGTTCTGGCATAGTGAATTCACCCAGGCg > 1:294695/1‑251 (MQ=255) cgGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgc < 1:370534/251‑1 (MQ=255) ggtATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgcggcg > 1:82012/1‑251 (MQ=255) ataGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCggcggg < 1:168173/250‑1 (MQ=255) agaataccctgttctcctcgtcTTTCTCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGAGGAATGGTCGGAGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCAGTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTAGCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGa < 2:170774/234‑1 (MQ=255) tctTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCAGTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACTCCAATCAGCGGCGTATCTTCCATGGTGACAAATTTGTGCTCTGGCATAGTGAAGTCACCCAGGCg < 1:17502/230‑1 (MQ=255) gtGCTCGTGGTCTTTTACCTGACGCGGACGCGTTCCATTCAGGCCGTAGAGCTCCGGTGGAATGGTCTGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCAGTGCATGGCGGAAATCATAGAGTTGCTCCAGCTAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGGGACAAATTTGTGCTCTGGCATAGTTAATTCGCCCAGGCGGAGCGGCGGGCTAATACCAAAgg < 2:164203/250‑1 (MQ=255) tGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCaaa < 1:162184/248‑1 (MQ=255) tttATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCTGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCCATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCggcgggcgggaacccaaagggctcccctac > 1:347321/1‑228 (MQ=255) tttATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCggcgggcagacaacaaaagggctccaatctc > 1:114569/1‑227 (MQ=255) gACTCGGCAGCGTTTCATTCAGGCCGTAGAGCACCGGCAGAGTGGTCGGCTCGTTGACGAGAAAGTCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGTGAACTGGAGTATCTTTGGGTAACACCAATCAGCGGCGTGTCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCTCTCCATTCAGGAGAAc < 2:78012/249‑1 (MQ=255) cgTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAAGCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTg < 1:17749/251‑1 (MQ=255) gCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTc < 1:80356/250‑1 (MQ=255) gagaAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGt < 2:34607/197‑1 (MQ=255) aaccGTGCCAGAACTGAGATCGCATGTCATGGCGGAAATCAGATAGTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATAAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTATATTGagag < 2:78137/248‑1 (MQ=255) atcatgccaggctggATAACGCATATAATTGCGGAAATCAGAGATGTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCTATCAGTGGCGTATCTGCCAGGGTGACAAATTTGTGCTTTGTCATAGTGAATTCACCCAGGCGTAGCGGGGGGCGAATACTAATGGCGCTCCACTCAAGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCTGGTAAATGTCTGTTGAGAGt < 1:183275/237‑1 (MQ=255) aacggatagctcgttgtaTGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTCGCTTTGGTTCTCCCCCATCAGCGGCGTAGCTTCCAGGGTGACAAATTTGTGCACTGGCATAGTTAATTCGCCCAGGCTTAGCGGCGGGCGAATACTAAAGGCGCTCCATTCAGGAGAACGGCGGTGTAGTTCAGGAGTCTGGGCGAACTGCTTCGTGAATGCGCGTGTATATGTCTTTTGAGAGTCGaaccgtta < 2:138633/234‑7 (MQ=255) ttCATGGCGGAAATCAGAGATTTTCGTCAGCGAACAGGAGTAGCTTTGGGTAACTCCAATCATCGGCGTATCTGCCAGGGTGACAAATTTGTGCTCGGGCATAGTGAATTCACCCAGGCGTAGCGGCTGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGagg < 2:294695/250‑3 (MQ=255) aTCAGAGATTTGCTCCAGCGAACAGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGATGTCCAGAATCGGAc < 1:306988/251‑1 (MQ=255) aGCGAACAGTAGTAGCTTTGGTTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCATGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCTCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGATGTCCAGAATCGGACGCGCAGTCAGGCGTAg < 1:358629/251‑1 (MQ=255) aGGAGTAGCTTTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATAc < 1:32399/102‑1 (MQ=255) | CACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGATGTCCAGAATCGGACGCGCAGTCAGGCGTAG > NC_000913/4634636‑4635115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |